Literature DB >> 12117800

TangleSolve: topological analysis of site-specific recombination.

Yuki Saka1, Mariel Vázquez.   

Abstract

UNLABELLED: TangleSolve is a program for analysing site-specific recombination using the tangle model. The program offers an easy-to-use graphical user interface and a visualization tool. Biologists working in topological enzymology can use this program to compute and visualize site-specific recombination mechanisms that accommodate their experimental data. TangleSolve can also prove useful as a teaching aid for mathematical biology and computational molecular biology courses. AVAILABILITY: http://bio.math.berkeley.edu/TangleSolve/

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Year:  2002        PMID: 12117800     DOI: 10.1093/bioinformatics/18.7.1011

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  3 in total

1.  FtsK-dependent XerCD-dif recombination unlinks replication catenanes in a stepwise manner.

Authors:  Koya Shimokawa; Kai Ishihara; Ian Grainge; David J Sherratt; Mariel Vazquez
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

2.  Unlinking chromosome catenanes in vivo by site-specific recombination.

Authors:  Ian Grainge; Migena Bregu; Mariel Vazquez; Viknesh Sivanathan; Stephen C Y Ip; David J Sherratt
Journal:  EMBO J       Date:  2007-09-06       Impact factor: 11.598

3.  Coloring the Mu transpososome.

Authors:  Isabel K Darcy; Jeff Chang; Nathan Druivenga; Colin McKinney; Ram K Medikonduri; Stacy Mills; Junalyn Navarra-Madsen; Arun Ponnusamy; Jesse Sweet; Travis Thompson
Journal:  BMC Bioinformatics       Date:  2006-10-05       Impact factor: 3.169

  3 in total

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