Literature DB >> 12116651

Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods.

D L Swofford1, P J Waddell, J P Huelsenbeck, P G Foster, P O Lewis, J S Rogers.   

Abstract

Mesh：

Year:  2001        PMID： 12116651

Source DB:  PubMed          Journal:  Syst Biol        ISSN： 1063-5157            Impact factor:   15.683


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  84 in total

1.  Analysis of the small GTPase gene superfamily of Arabidopsis.

Authors:  Vanessa Vernoud; Amy C Horton; Zhenbiao Yang; Erik Nielsen
Journal:  Plant Physiol       Date:  2003-03       Impact factor: 8.340

Review 2.  Molecular phylogenetics: principles and practice.

Authors:  Ziheng Yang; Bruce Rannala
Journal:  Nat Rev Genet       Date:  2012-03-28       Impact factor: 53.242

3.  Assessment of substitution model adequacy using frequentist and Bayesian methods.

Authors:  Jennifer Ripplinger; Jack Sullivan
Journal:  Mol Biol Evol       Date:  2010-07-08       Impact factor: 16.240

4.  Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees.

Authors:  J Gordon Burleigh; Mukul S Bansal; Oliver Eulenstein; Stefanie Hartmann; André Wehe; Todd J Vision
Journal:  Syst Biol       Date:  2010-12-24       Impact factor: 15.683

5.  Genetic diversity of microbial eukaryotes in anoxic sediment around fumaroles on a submarine caldera floor based on the small-subunit rDNA phylogeny.

Authors:  Kiyotaka Takishita; Hiroshi Miyake; Masaru Kawato; Tadashi Maruyama
Journal:  Extremophiles       Date:  2005-03-03       Impact factor: 2.395

6.  Ancient DNA from giant extinct lemurs confirms single origin of Malagasy primates.

Authors:  K Praveen Karanth; Thomas Delefosse; Berthe Rakotosamimanana; Thomas J Parsons; Anne D Yoder
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-22       Impact factor: 11.205

Review 7.  Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).

Authors:  Jim Leebens-Mack; Todd Vision; Eric Brenner; John E Bowers; Steven Cannon; Mark J Clement; Clifford W Cunningham; Claude dePamphilis; Rob deSalle; Jeff J Doyle; Jonathan A Eisen; Xun Gu; John Harshman; Robert K Jansen; Elizabeth A Kellogg; Eugene V Koonin; Brent D Mishler; Hervé Philippe; J Chris Pires; Yin-Long Qiu; Seung Y Rhee; Kimmen Sjölander; Douglas E Soltis; Pamela S Soltis; Dennis W Stevenson; Kerr Wall; Tandy Warnow; Christian Zmasek
Journal:  OMICS       Date:  2006

8.  Evolutionary origins of the eukaryotic shikimate pathway: gene fusions, horizontal gene transfer, and endosymbiotic replacements.

Authors:  Thomas A Richards; Joel B Dacks; Samantha A Campbell; Jeffrey L Blanchard; Peter G Foster; Rima McLeod; Craig W Roberts
Journal:  Eukaryot Cell       Date:  2006-09

9.  Cloning and developmental expression of the soxB2 genes, sox14 and sox21, during Xenopus laevis embryogenesis.

Authors:  Doreen D Cunningham; Zhuo Meng; Bernd Fritzsch; Elena Silva Casey
Journal:  Int J Dev Biol       Date:  2008       Impact factor: 2.203

10.  A novel class of gene controlling virulence in plant pathogenic ascomycete fungi.

Authors:  Shun-Wen Lu; Scott Kroken; Bee-Na Lee; Barbara Robbertse; Alice C L Churchill; O C Yoder; B Gillian Turgeon
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-02       Impact factor: 11.205
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