Literature DB >> 12116151

Theory of sequence effects on DNA translocation through proteins and nanopores.

Murugappan Muthukumar1.   

Abstract

A general formula for the sequence effects on the average translocation time of a polymer passing through a narrow hole under a chemical potential gradient is provided. The utility of the general expression is illustrated by considering the diblock sequence of a polymer with two kinds of monomers. The experimental conditions required for sufficient discrimination of various sequences are addressed.

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Year:  2002        PMID： 12116151     DOI： 10.1002/1522-2683(200205)23:10<1417::AID-ELPS1417>3.0.CO;2-O

Source DB:  PubMed          Journal:  Electrophoresis        ISSN： 0173-0835            Impact factor:   3.535


  6 in total

1.  Temperature Effect on Ionic Current and ssDNA Transport through Nanopores.

Authors:  Linda Payet; Marlène Martinho; Céline Merstorf; Manuela Pastoriza-Gallego; Juan Pelta; Virgile Viasnoff; Loïc Auvray; Murugappan Muthukumar; Jérôme Mathé
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

2.  Determination of RNA orientation during translocation through a biological nanopore.

Authors:  Tom Z Butler; Jens H Gundlach; Mark A Troll
Journal:  Biophys J       Date:  2005-10-07       Impact factor: 4.033

3.  Translocation of a heterogeneous polymer.

Authors:  Stephen Mirigian; Yanbo Wang; Murugappan Muthukumar
Journal:  J Chem Phys       Date:  2012-08-14       Impact factor: 3.488

4.  Probing single nanometer-scale pores with polymeric molecular rulers.

Authors:  Sarah E Henrickson; Edmund A DiMarzio; Qian Wang; Vincent M Stanford; John J Kasianowicz
Journal:  J Chem Phys       Date:  2010-04-07       Impact factor: 3.488

5.  Simulation of polymer translocation through protein channels.

Authors:  M Muthukumar; C Y Kong
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-27       Impact factor: 11.205

6.  Partitioning of individual flexible polymers into a nanoscopic protein pore.

Authors:  Liviu Movileanu; Stephen Cheley; Hagan Bayley
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033
  6 in total

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