Literature DB >> 12115146

Controls exerted by the Aib residue: helix formation and helix reversal.

I L Karle1.   

Abstract

The helix forming properties of the achiral alpha-amino isobutyric residue (Aib) have been demonstrated by numerous crystal structure analyses of designed and naturally occurring peptides containing one or more Aib residues in the sequence. Experimental and computational results concerning the type of helix obtained, whether the 3(10)-helix with 4 --> 1 type hydrogen bonds or the alpha-helix with 5 --> 1 hydrogen bonds or mixtures of the two, have been published. This paper deals with residues that, if inserted into a sequence, could perturb the helix-forming propensity afforded by the presence of Aib residues. Examples of structures will be presented in which Pro, Hyp, Gly-Gly, d-Ala-Gly, and Lac have been centrally placed in the sequence. In addition to the formation of helices, detailed experimentally obtained conformation information is presented for the role of the Aib residue in reversing the sense of the helix (the Schellman motif) with the consequent formation of the 6 --> 1 type hydrogen bond or a solvated 6 --> 1 hydrogen bond. Data are presented for 13 molecules with helix reversals at the C-terminus or near the center of the sequence. Published 2002 Wiley Periodicals, Inc.

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Year:  2001        PMID: 12115146     DOI: 10.1002/1097-0282(2001)60:5<351::AID-BIP10174>3.0.CO;2-U

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  13 in total

1.  Controlled alteration of the shape and conformational stability of alpha-helical cell-lytic peptides: effect on mode of action and cell specificity.

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Journal:  Biochem J       Date:  2005-08-15       Impact factor: 3.857

Review 2.  An enhanced functional interrogation/manipulation of intracellular signaling pathways with the peptide 'stapling' technology.

Authors:  Y He; D Chen; W Zheng
Journal:  Oncogene       Date:  2015-03-23       Impact factor: 9.867

3.  Identification of a hinge residue controlling islet amyloid polypeptide self-assembly and cytotoxicity.

Authors:  Elizabeth Godin; Phuong Trang Nguyen; Ximena Zottig; Steve Bourgault
Journal:  J Biol Chem       Date:  2019-04-11       Impact factor: 5.157

4.  The R.E.D. tools: advances in RESP and ESP charge derivation and force field library building.

Authors:  François-Yves Dupradeau; Adrien Pigache; Thomas Zaffran; Corentin Savineau; Rodolphe Lelong; Nicolas Grivel; Dimitri Lelong; Wilfried Rosanski; Piotr Cieplak
Journal:  Phys Chem Chem Phys       Date:  2010-06-23       Impact factor: 3.676

5.  Computational design of thermostabilizing D-amino acid substitutions.

Authors:  Agustina Rodriguez-Granillo; Srinivas Annavarapu; Lei Zhang; Ronald L Koder; Vikas Nanda
Journal:  J Am Chem Soc       Date:  2011-10-27       Impact factor: 15.419

6.  Conformational preferences of 1-amino-2-phenylcyclohexanecarboxylic acid, a phenylalanine cyclohexane analogue.

Authors:  Carlos Alemán; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Jordi Casanovas
Journal:  J Org Chem       Date:  2009-10-16       Impact factor: 4.354

7.  Synthesis of Boc-protected bicycloproline.

Authors:  Sujeewa Ranatunga; Juan R Del Valle
Journal:  Tetrahedron Lett       Date:  2009-05-27       Impact factor: 2.415

8.  Crystal structure of a hydrophobic 19-residue peptide helix containing three centrally located D amino acids.

Authors:  Isabella L Karle; Hosahudya N Gopi; Padmanabhan Balaram
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-14       Impact factor: 11.205

9.  Synthesis of enantiomerically enriched (R)-C-labelled 2-aminoisobutyric acid (Aib) by conformational memory in the alkylation of a derivative of L-alanine.

Authors:  Stephen P Fletcher; Jordi Solà; Dean Holt; Robert A Brown; Jonathan Clayden
Journal:  Beilstein J Org Chem       Date:  2011-09-20       Impact factor: 2.883

10.  Development of a Cell-penetrating Peptide that Exhibits Responsive Changes in its Secondary Structure in the Cellular Environment.

Authors:  Hiroko Yamashita; Takuma Kato; Makoto Oba; Takashi Misawa; Takayuki Hattori; Nobumichi Ohoka; Masakazu Tanaka; Mikihiko Naito; Masaaki Kurihara; Yosuke Demizu
Journal:  Sci Rep       Date:  2016-09-09       Impact factor: 4.379

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