Literature DB >> 12107280

Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds.

Parag Mallick1, Daniel R Boutz, David Eisenberg, Todd O Yeates.   

Abstract

Disulfide bonds have only rarely been found in intracellular proteins. That pattern is consistent with the chemically reducing environment inside the cells of well-studied organisms. However, recent experiments and new calculations based on genomic data of archaea provide striking contradictions to this pattern. Our results indicate that the intracellular proteins of certain hyperthermophilic archaea, especially the crenarchaea Pyrobaculum aerophilum and Aeropyrum pernix, are rich in disulfide bonds. This finding implicates disulfide bonding in stabilizing many thermostable proteins and points to novel chemical environments inside these microbes. These unexpected results illustrate the wealth of biochemical insights available from the growing reservoir of genomic data.

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Year:  2002        PMID: 12107280      PMCID: PMC124975          DOI: 10.1073/pnas.142310499

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1.

Authors:  Y Kawarabayasi; Y Hino; H Horikawa; S Yamazaki; Y Haikawa; K Jin-no; M Takahashi; M Sekine; S Baba; A Ankai; H Kosugi; A Hosoyama; S Fukui; Y Nagai; K Nishijima; H Nakazawa; M Takamiya; S Masuda; T Funahashi; T Tanaka; Y Kudoh; J Yamazaki; N Kushida; A Oguchi; H Kikuchi
Journal:  DNA Res       Date:  1999-04-30       Impact factor: 4.458

2.  Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability.

Authors:  M J Thompson; D Eisenberg
Journal:  J Mol Biol       Date:  1999-07-09       Impact factor: 5.469

3.  Detecting protein function and protein-protein interactions from genome sequences.

Authors:  E M Marcotte; M Pellegrini; H L Ng; D W Rice; T O Yeates; D Eisenberg
Journal:  Science       Date:  1999-07-30       Impact factor: 47.728

4.  Chaperone activity with a redox switch.

Authors:  U Jakob; W Muse; M Eser; J C Bardwell
Journal:  Cell       Date:  1999-02-05       Impact factor: 41.582

Review 5.  Machine learning approaches for the prediction of signal peptides and other protein sorting signals.

Authors:  H Nielsen; S Brunak; G von Heijne
Journal:  Protein Eng       Date:  1999-01

6.  Distribution of protein folds in the three superkingdoms of life.

Authors:  Y I Wolf; S E Brenner; P A Bash; E V Koonin
Journal:  Genome Res       Date:  1999-01       Impact factor: 9.043

Review 7.  The stability of proteins in extreme environments.

Authors:  R Jaenicke; G Böhm
Journal:  Curr Opin Struct Biol       Date:  1998-12       Impact factor: 6.809

8.  The role of the thioredoxin and glutaredoxin pathways in reducing protein disulfide bonds in the Escherichia coli cytoplasm.

Authors:  W A Prinz; F Aslund; A Holmgren; J Beckwith
Journal:  J Biol Chem       Date:  1997-06-20       Impact factor: 5.157

9.  The crystal structure of a hyperthermophilic archaeal TATA-box binding protein.

Authors:  B S DeDecker; R O'Brien; P J Fleming; J H Geiger; S P Jackson; P B Sigler
Journal:  J Mol Biol       Date:  1996-12-20       Impact factor: 5.469

10.  The complete genome of the hyperthermophilic bacterium Aquifex aeolicus.

Authors:  G Deckert; P V Warren; T Gaasterland; W G Young; A L Lenox; D E Graham; R Overbeek; M A Snead; M Keller; M Aujay; R Huber; R A Feldman; J M Short; G J Olsen; R V Swanson
Journal:  Nature       Date:  1998-03-26       Impact factor: 49.962

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  64 in total

1.  Distance-dependent statistical potentials for discriminating thermophilic and mesophilic proteins.

Authors:  Yunqi Li; Jianwen Fang
Journal:  Biochem Biophys Res Commun       Date:  2010-05-06       Impact factor: 3.575

2.  A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase.

Authors:  Martine Roovers; Johan Wouters; Janusz M Bujnicki; Catherine Tricot; Victor Stalon; Henri Grosjean; Louis Droogmans
Journal:  Nucleic Acids Res       Date:  2004-01-22       Impact factor: 16.971

Review 3.  The archaeal Sec-dependent protein translocation pathway.

Authors:  Albert Bolhuis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-06-29       Impact factor: 6.237

4.  Intramolecular disulfide bond between catalytic cysteines in an intein precursor.

Authors:  Wen Chen; Lingyun Li; Zhenming Du; Jiajing Liu; Julie N Reitter; Kenneth V Mills; Robert J Linhardt; Chunyu Wang
Journal:  J Am Chem Soc       Date:  2012-01-27       Impact factor: 15.419

5.  Amylomaltase of Pyrobaculum aerophilum IM2 produces thermoreversible starch gels.

Authors:  Thijs Kaper; Boguslawa Talik; Thijs J Ettema; Herman Bos; Marc J E C van der Maarel; Lubbert Dijkhuizen
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

Review 6.  Posttranslational protein modification in Archaea.

Authors:  Jerry Eichler; Michael W W Adams
Journal:  Microbiol Mol Biol Rev       Date:  2005-09       Impact factor: 11.056

7.  Discovery of a thermophilic protein complex stabilized by topologically interlinked chains.

Authors:  Daniel R Boutz; Duilio Cascio; Julian Whitelegge; L Jeanne Perry; Todd O Yeates
Journal:  J Mol Biol       Date:  2007-03-06       Impact factor: 5.469

8.  The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs).

Authors:  Cameron Mura; Anna Kozhukhovsky; Mari Gingery; Martin Phillips; David Eisenberg
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

9.  A novel function of tissue-type transglutaminase: protein disulphide isomerase.

Authors:  Go Hasegawa; Motoi Suwa; Yasuo Ichikawa; Tetsuro Ohtsuka; Satoru Kumagai; Masashi Kikuchi; Yoshitaka Sato; Yuji Saito
Journal:  Biochem J       Date:  2003-08-01       Impact factor: 3.857

10.  Protein flexibility and cysteine reactivity: influence of mobility on the H-bond network and effects on pKa prediction.

Authors:  Stefano M Marino
Journal:  Protein J       Date:  2014-08       Impact factor: 2.371

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