Literature DB >> 12105903

Formation and stability of peptide enolates in aqueous solution.

Ana Rios1, John P Richard, Tina L Amyes.   

Abstract

Second-order rate constants k(DO) (M(-1) s(-1)) were determined in D(2)O for deprotonation of the N-terminal alpha-amino carbon of glycylglycine and glycylglycylglycine zwitterions, the internal alpha-amino carbon of the glycylglycylglycine anion, and the acetyl methyl group and the alpha-amino carbon of the N-acetylglycine anion and N-acetylglycinamide by deuterioxide ion. The data were used to estimate values of k(HO) (M(-1) s(-1)) for proton transfer from these carbon acids to hydroxide ion in H(2)O. Values of the pK(a) for these carbon acids ranging from 23.9 to 30.8 were obtained by interpolation or extrapolation of good linear correlations between log k(HO) and carbon acid pK(a) established in earlier work for deprotonation of related neutral and cationic alpha-carbonyl carbon acids. The alpha-amino carbon at a N-protonated N-terminus of a peptide or protein is estimated to undergo deprotonation about 130-fold faster than the alpha-amino carbon at the corresponding internal amino acid residue. The value of k(HO) for deprotonation of the N-terminal alpha-amino carbon of the glycylglycylglycine zwitterion (pK(a) = 25.1) is similar to that for deprotonation of the more acidic ketone acetone (pK(a) = 19.3), as a result of a lower Marcus intrinsic barrier to deprotonation of cationic alpha-carbonyl carbon acids. The cationic NH(3)(+) group is generally more strongly electron-withdrawing than the neutral NHAc group, but the alpha-NH(3)(+) and the alpha-NHAc substituents result in very similar decreases in the pK(a) of several alpha-carbonyl carbon acids.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12105903     DOI: 10.1021/ja026267a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

Review 1.  The PLP cofactor: lessons from studies on model reactions.

Authors:  John P Richard; Tina L Amyes; Juan Crugeiras; Ana Rios
Journal:  Biochim Biophys Acta       Date:  2010-12-20

2.  Stability of the 6-carbanion of uracil analogues: mechanistic implications for model reactions of orotidine-5'-monophosphate decarboxylase.

Authors:  Freeman M Wong; Christina C Capule; Weiming Wu
Journal:  Org Lett       Date:  2006-12-21       Impact factor: 6.005

3.  Isopentenyl diphosphate isomerase catalyzed reactions in D2O: product release limits the rate of this sluggish enzyme-catalyzed reaction.

Authors:  Venkatadurga Jonnalagadda; Krisztina Toth; John P Richard
Journal:  J Am Chem Soc       Date:  2012-04-05       Impact factor: 15.419

4.  Stabilities of Uracil and Pyridone-Based Carbanions: A Systematic Study in the Gas Phase and Solution and Implications for the Mechanism of Orotidine-5'-Monophosphate Decarboxylase.

Authors:  Nicholas A Senger; Carly E Bliss; James R Keeffe; Scott Gronert; Weiming Wu
Journal:  Tetrahedron       Date:  2013-07-01       Impact factor: 2.457

5.  Wildtype and engineered monomeric triosephosphate isomerase from Trypanosoma brucei: partitioning of reaction intermediates in D2O and activation by phosphite dianion.

Authors:  M Merced Malabanan; Maybelle K Go; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2011-06-06       Impact factor: 3.162

6.  Structure-reactivity effects on primary deuterium isotope effects on protonation of ring-substituted alpha-methoxystyrenes.

Authors:  Wing-Yin Tsang; John P Richard
Journal:  J Am Chem Soc       Date:  2009-10-07       Impact factor: 15.419

Review 7.  Pyridoxal 5'-phosphate: electrophilic catalyst extraordinaire.

Authors:  John P Richard; Tina L Amyes; Juan Crugeiras; Ana Rios
Journal:  Curr Opin Chem Biol       Date:  2009-07-27       Impact factor: 8.822

8.  Enzymatic Catalysis of Proton Transfer and Decarboxylation Reactions.

Authors:  John P Richard
Journal:  Pure Appl Chem       Date:  2011-07-08       Impact factor: 2.453

9.  Glycine enolates: the effect of formation of iminium ions to simple ketones on alpha-amino carbon acidity and a comparison with pyridoxal iminium ions.

Authors:  Juan Crugeiras; Ana Rios; Enrique Riveiros; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2008-01-17       Impact factor: 15.419

10.  Substituent Effects on Carbon Acidity in Aqueous Solution and at Enzyme Active Sites.

Authors:  Tina L Amyes; John P Richard
Journal:  Synlett       Date:  2017-03-10       Impact factor: 2.454

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.