Literature DB >> 12096895

A relational database for cryoEM: experience at one year and 50 000 images.

Denis Fellmann1, James Pulokas, Ronald A Milligan, Bridget Carragher, Clinton S Potter.   

Abstract

For the past year we have been using a relational database as part of an automated data collection system for cryoEM. The database is vital for keeping track of the very large number of images collected and analyzed by the automated system and essential for quantitatively evaluating the utility of methods and algorithms used in the data collection. The database can be accessed using a variety of tools including specially developed Web-based interfaces that enable a user to annotate and categorize images using a Web-based form. (c) 2002 Elsevier Science (USA).

Mesh:

Year:  2002        PMID: 12096895     DOI: 10.1016/s1047-8477(02)00002-3

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  5 in total

1.  A test-bed for optimizing high-resolution single particle reconstructions.

Authors:  Scott M Stagg; Gabriel C Lander; Joel Quispe; Neil R Voss; Anchi Cheng; Henry Bradlow; Steven Bradlow; Bridget Carragher; Clinton S Potter
Journal:  J Struct Biol       Date:  2008-05-06       Impact factor: 2.867

Review 2.  Software tools for molecular microscopy.

Authors:  Ross Smith; Bridget Carragher
Journal:  J Struct Biol       Date:  2008-03-13       Impact factor: 2.867

3.  The Caltech Tomography Database and Automatic Processing Pipeline.

Authors:  H Jane Ding; Catherine M Oikonomou; Grant J Jensen
Journal:  J Struct Biol       Date:  2015-06-15       Impact factor: 2.867

4.  Appion: an integrated, database-driven pipeline to facilitate EM image processing.

Authors:  Gabriel C Lander; Scott M Stagg; Neil R Voss; Anchi Cheng; Denis Fellmann; James Pulokas; Craig Yoshioka; Christopher Irving; Anke Mulder; Pick-Wei Lau; Dmitry Lyumkis; Clinton S Potter; Bridget Carragher
Journal:  J Struct Biol       Date:  2009-04       Impact factor: 2.867

5.  ETDB-Caltech: A blockchain-based distributed public database for electron tomography.

Authors:  Davi R Ortega; Catherine M Oikonomou; H Jane Ding; Prudence Rees-Lee; Grant J Jensen
Journal:  PLoS One       Date:  2019-04-15       Impact factor: 3.240

  5 in total

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