Literature DB >> 12094931

Evaluation of PCR primers and PCR conditions for specific detection of common airborne fungi.

Zhihong Wu1, Xiao-Ru Wang, Göran Blomquist.   

Abstract

We examined the selectivity of 53 sets of primers for environmental monitoring of indoor air quality. Thirty-six fungal strains, representing 26 species from 14 genera of commonly occurring fungi, and 16 different bacterial strains, representing both gram-negative and gram-positive species, were included in the experiment. We verified the specificity of 28 of the 53 sets of primers, which were classified as universal fungal, universal bacterial, group or species specific. The PCR conditions required for optimal specificity were also determined. These results can serve as a guide for the step-wise PCR-based detection and identification of airborne fungi commonly found in indoor environments.

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Year:  2002        PMID: 12094931     DOI: 10.1039/b200490a

Source DB:  PubMed          Journal:  J Environ Monit        ISSN: 1464-0325


  14 in total

1.  18S rRNA gene variation among common airborne fungi, and development of specific oligonucleotide probes for the detection of fungal isolates.

Authors:  Zhihong Wu; Yoshihiko Tsumura; Göran Blomquist; Xiao-Ru Wang
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

2.  A simple polymerase chain reaction/restriction fragment length polymorphism assay capable of identifying medically relevant filamentous fungi.

Authors:  Timothy R Dean; Michael Kohan; Doris Betancourt; Marc Y Menetrez
Journal:  Mol Biotechnol       Date:  2005-09       Impact factor: 2.695

3.  A simple polymerase chain reaction-sequencing analysis capable of identifying multiple medically relevant filamentous fungal species.

Authors:  Timothy R Dean; Michael Kohan; Doris Betancourt; Marc Y Menetrez
Journal:  Mycopathologia       Date:  2006-10       Impact factor: 2.574

4.  Analysis of the fungal flora in environmental dust samples by PCR-SSCP method.

Authors:  Tobias Janke; Karin Schwaiger; Markus Ege; Carmen Fahn; Erika von Mutius; Johann Bauer; Melanie Mayer
Journal:  Curr Microbiol       Date:  2013-03-10       Impact factor: 2.188

5.  Determining fungi rRNA copy number by PCR.

Authors:  Jonathan Black; Timothy Dean; Grace Byfield; Karin Foarde; Marc Menetrez
Journal:  J Biomol Tech       Date:  2013-04

6.  Detection and quantification of Wallemia sebi in aerosols by real-time PCR, conventional PCR, and cultivation.

Authors:  Qing-Yin Zeng; Sven-Olof Westermark; Asa Rasmuson-Lestander; Xiao-Ru Wang
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

7.  Accessing indoor fungal contamination using conventional and molecular methods in Portuguese poultries.

Authors:  C Viegas; J Malta-Vacas; R Sabino; S Viegas; C Veríssimo
Journal:  Environ Monit Assess       Date:  2013-11-11       Impact factor: 2.513

8.  Fungi Occurrence in Ready-to-Eat Hazelnuts (Corylus avellana) From Different Boreal Hemisphere Areas.

Authors:  Silvia Jane Lombardi; Gianfranco Pannella; Patrizio Tremonte; Ida Mercurio; Franca Vergalito; Costantino Caturano; Lucia Maiuro; Massimo Iorizzo; Mariantonietta Succi; Elena Sorrentino; Raffaele Coppola
Journal:  Front Microbiol       Date:  2022-04-26       Impact factor: 5.640

9.  Specific and sensitive detection of the conifer pathogen Gremmeniella abietina by nested PCR.

Authors:  Qing-Yin Zeng; Per Hansson; Xiao-Ru Wang
Journal:  BMC Microbiol       Date:  2005-11-09       Impact factor: 3.605

10.  Colony-PCR Is a Rapid Method for DNA Amplification of Hyphomycetes.

Authors:  Georg Walch; Maria Knapp; Georg Rainer; Ursula Peintner
Journal:  J Fungi (Basel)       Date:  2016-04-19
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