Literature DB >> 12086510

Some notes on 2-D graphical representation of DNA sequence.

Yachun Liu1, Xiaofeng Guo, Jin Xu, Linqiang Pan, Shiying Wang.   

Abstract

Some 2-D and 3-D graphical representations of DNA sequences have been given by Nandy, Leong and Mogenthaler, and Randic et al., which give visual characterizations of DNA sequences. In this paper, we presented a novel graphical representation of DNA sequences by taking four special vectors in 2-D Cartesian coordinate system to represent the four nucleic acid bases in DNA sequences, so that a DNA sequence is denoted on a plane by a directed walk. It is shown that the new graphical representation of DNA sequences has lower or nondegeneracy.

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Year:  2002        PMID: 12086510     DOI: 10.1021/ci010017g

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  2 in total

1.  DNA sequence representation without degeneracy.

Authors:  Stephen S-T Yau; Jiasong Wang; Amir Niknejad; Chaoxiao Lu; Ning Jin; Yee-Kin Ho
Journal:  Nucleic Acids Res       Date:  2003-06-15       Impact factor: 16.971

2.  Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices.

Authors:  Alcides Perez-Bello; Cristian Robert Munteanu; Florencio M Ubeira; Alexandre Lopes De Magalhães; Eugenio Uriarte; Humberto González-Díaz
Journal:  J Theor Biol       Date:  2008-10-17       Impact factor: 2.691

  2 in total

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