Literature DB >> 12084583

Chloroplast ribosomal S14 protein transcript is edited to create a translation initiation codon in the moss Physcomitrella patens.

Yuki Miyata1, Chika Sugiura, Yuki Kobayashi, Mitsuru Hagiwara, Mamoru Sugita.   

Abstract

The rps14 transcript is edited in the moss Physcomitrella patens chloroplast by a C-to-U transition, to create a translation initiation codon, AUG. The efficiency of RNA editing was low, with approximately 20% of rps14 transcripts edited. This suggests that the translation of rps14 mRNA is strictly regulated by RNA editing. This is the first report of RNA editing in P. patens and the creation of a translation initiation codon in rps14 mRNA in chloroplasts.

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Year:  2002        PMID： 12084583     DOI： 10.1016/s0167-4781(02)00346-9

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN： 0006-3002


  9 in total

1.  Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus.

Authors:  Chika Sugiura; Yuki Kobayashi; Setsuyuki Aoki; Chieko Sugita; Mamoru Sugita
Journal:  Nucleic Acids Res       Date:  2003-09-15       Impact factor: 16.971

2.  RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal.

Authors:  Mareike Rüdinger; Helena T Funk; Stefan A Rensing; Uwe G Maier; Volker Knoop
Journal:  Mol Genet Genomics       Date:  2009-01-24       Impact factor: 3.291

3.  Relationship between mRNA secondary structure and sequence variability in Chloroplast genes: possible life history implications.

Authors:  Neeraja M Krishnan; Hervé Seligmann; Basuthkar J Rao
Journal:  BMC Genomics       Date:  2008-01-28       Impact factor: 3.969

4.  Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns - a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles.

Authors:  Nils Knie; Felix Grewe; Simon Fischer; Volker Knoop
Journal:  BMC Evol Biol       Date:  2016-06-21       Impact factor: 3.260

Review 5.  An Overview of Pentatricopeptide Repeat (PPR) Proteins in the Moss Physcomitrium patens and Their Role in Organellar Gene Expression.

Authors:  Mamoru Sugita
Journal:  Plants (Basel)       Date:  2022-08-31

6.  PREPACT 2.0: Predicting C-to-U and U-to-C RNA Editing in Organelle Genome Sequences with Multiple References and Curated RNA Editing Annotation.

Authors:  Henning Lenz; Volker Knoop
Journal:  Bioinform Biol Insights       Date:  2013-01-10

Review 7.  Architecture of the PPR gene family in the moss Physcomitrella patens.

Authors:  Mamoru Sugita; Mizuho Ichinose; Mizuki Ide; Chieko Sugita
Journal:  RNA Biol       Date:  2013-04-23       Impact factor: 4.652

8.  Organellar genomes of the four-toothed moss, Tetraphis pellucida.

Authors:  Neil E Bell; Jeffrey L Boore; Brent D Mishler; Jaakko Hyvönen
Journal:  BMC Genomics       Date:  2014-05-19       Impact factor: 3.969

9.  Molecular evidence for convergent evolution and allopolyploid speciation within the Physcomitrium-Physcomitrella species complex.

Authors:  Anna K Beike; Mark von Stackelberg; Mareike Schallenberg-Rüdinger; Sebastian T Hanke; Marie Follo; Dietmar Quandt; Stuart F McDaniel; Ralf Reski; Benito C Tan; Stefan A Rensing
Journal:  BMC Evol Biol       Date:  2014-07-11       Impact factor: 3.260
  9 in total

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