Literature DB >> 12081811

A higher resolution radiation hybrid map of bovine chromosome 13.

Jörg Schläpfer1, Nasikhat Stahlberger-Saitbekova, Sergio Comincini, Claude Gaillard, David Hills, Rudolf K Meyer, John L Williams, Jim E Womack, Andreas Zurbriggen, Gaudenz Dolf.   

Abstract

In this paper, we present a radiation hybrid framework map of BTA13 composed of nine microsatellite loci, six genes and one EST. The map has been developed using a recently constructed 12'000 rad bovine-hamster whole-genome radiation hybrid panel. Moreover, we present a comprehensive map of BTA13 comprising 72 loci, of which 45 are microsatellites, 20 are genes and seven are ESTs. The map has an estimated length of 2694.7 cR(12'000). The proposed order is in general agreement with published maps of BTA13. Our results only partially support previously published information of five blocks of conserved gene order between cattle and man. We found no evidence for the existence of an HSA20 homologous segment of coding DNA on BTA13 located centromeric of a confirmed HSA10 homologous region. The present map increases the marker density and the marker resolution on BTA13 and enables further insight into the evolutionary development of the chromosome as compared to man.

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Year:  2002        PMID: 12081811      PMCID: PMC2705431          DOI: 10.1186/1297-9686-34-2-255

Source DB:  PubMed          Journal:  Genet Sel Evol        ISSN: 0999-193X            Impact factor:   4.297


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  4 in total

1.  Application of AFLP technology to radiation hybrid mapping.

Authors:  C Gorni; J L Williams; H C M Heuven; R Negrini; A Valentini; M J T van Eijk; D Waddington; M Zevenbergen; P Ajmone Marsan; J D Peleman
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

2.  DNA polymorphisms of the prion doppel gene region in four different German cattle breeds and cows tested positive for bovine spongiform encephalopathy.

Authors:  N Balbus; A Humeny; K Kashkevich; I Henz; C Fischer; C-M Becker; K Schiebel
Journal:  Mamm Genome       Date:  2005-11-11       Impact factor: 2.957

3.  A gene-based high-resolution comparative radiation hybrid map as a framework for genome sequence assembly of a bovine chromosome 6 region associated with QTL for growth, body composition, and milk performance traits.

Authors:  Rosemarie Weikard; Tom Goldammer; Pascal Laurent; James E Womack; Christa Kuehn
Journal:  BMC Genomics       Date:  2006-03-16       Impact factor: 3.969

4.  High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly.

Authors:  Aparna Prasad; Thomas Schiex; Stephanie McKay; Brenda Murdoch; Zhiquan Wang; James E Womack; Paul Stothard; Stephen S Moore
Journal:  BMC Genomics       Date:  2007-09-04       Impact factor: 3.969

  4 in total

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