Literature DB >> 12077426

Ultrahigh-resolution structure of high-potential iron-sulfur protein from Thermochromatium tepidum.

Lijun Liu1, Terukazu Nogi, Masayuki Kobayashi, Tsunenori Nozawa, Kunio Miki.   

Abstract

Crystals of the high-potential iron-sulfur protein (HiPIP) from Thermochromatium tepidum diffract X-rays to 0.80 A using synchrotron radiation at 100 K. The crystal structure of this HiPIP was refined at this ultrahigh resolution with anisotropic temperature factors for all atoms to conventional crystallographic R factors of 0.092 and 0.101 for F(o) > 4sigma(F(o)) and all reflections, respectively. The present structure provides a more precise picture than the previous 1.5 A structure and allows location of the positions of most H atoms. The structure revealed a partly hydrophobic cavity near the main hydrophobic area and a much larger inter-cluster approach distance (23.454 A, the c constant of the unit cell) in the crystal packing than other types of HiPIPs. The structural features involved in the electron-transfer reaction of HiPIP are discussed.

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Year:  2002        PMID: 12077426     DOI: 10.1107/s0907444902006261

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  14 in total

1.  Atomic resolution studies of carbonic anhydrase II.

Authors:  Craig A Behnke; Isolde Le Trong; Jeff W Godden; Ethan A Merritt; David C Teller; Jürgen Bajorath; Ronald E Stenkamp
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Review 2.  Structural and functional studies on the tetraheme cytochrome subunit and its electron donor proteins: the possible docking mechanisms during the electron transfer reaction.

Authors:  Terukazu Nogi; Yu Hirano; Kunio Miki
Journal:  Photosynth Res       Date:  2005       Impact factor: 3.573

3.  Structural analysis of the HiPIP from the acidophilic bacteria: Acidithiobacillus ferrooxidans.

Authors:  Matthieu Nouailler; Patrice Bruscella; Elisabeth Lojou; Régine Lebrun; Violaine Bonnefoy; Françoise Guerlesquin
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4.  Charge-density analysis of an iron-sulfur protein at an ultra-high resolution of 0.48 Å.

Authors:  Yu Hirano; Kazuki Takeda; Kunio Miki
Journal:  Nature       Date:  2016-05-18       Impact factor: 49.962

5.  Structure at 1.0 A resolution of a high-potential iron-sulfur protein involved in the aerobic respiratory chain of Rhodothermus marinus.

Authors:  Meike Stelter; Ana M P Melo; Sigridur Hreggvidsson; Lígia M Saraiva; Miguel Teixeira; Margarida Archer
Journal:  J Biol Inorg Chem       Date:  2010-03       Impact factor: 3.358

6.  The structure of the 2[4Fe-4S] ferredoxin from Pseudomonas aeruginosa at 1.32-A resolution: comparison with other high-resolution structures of ferredoxins and contributing structural features to reduction potential values.

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Journal:  J Biol Inorg Chem       Date:  2006-04-05       Impact factor: 3.358

Review 7.  Iron-sulfur protein folds, iron-sulfur chemistry, and evolution.

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Journal:  J Biol Inorg Chem       Date:  2007-11-09       Impact factor: 3.358

8.  Insight into environmental effects on bonding and redox properties of [4Fe-4S] clusters in proteins.

Authors:  Shuqiang Niu; Toshiko Ichiye
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

9.  Identifying sequence determinants of reduction potentials of metalloproteins.

Authors:  Bradley Scott Perrin; Toshiko Ichiye
Journal:  J Biol Inorg Chem       Date:  2013-05-21       Impact factor: 3.358

10.  Calculating standard reduction potentials of [4Fe-4S] proteins.

Authors:  Bradley Scott Perrin; Shuqiang Niu; Toshiko Ichiye
Journal:  J Comput Chem       Date:  2012-11-01       Impact factor: 3.376

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