Literature DB >> 12072961

Planococcus antarcticus and Planococcus psychrophilus spp. nov. isolated from cyanobacterial mat samples collected from ponds in Antarctica.

G S N Reddy1, J S S Prakash, M Vairamani, S Prabhakar, G I Matsumoto, S Shivaji.   

Abstract

Thirteen orange-pigmented bacteria associated with cyanobacterial mat samples collected from four different lakes in McMurdo, Antarctica, were isolated. Twelve of the isolates, which were coccoid in shape, were very similar and possessed all the characteristics of the genus Planococcus and represented a new species, which was assigned the name Planococcus antarcticus sp. nov. (CMS 26or(T)). Apart from the phenotypic differences, P. antarcticus differed from all reported species of Planococcus by more than 2.5% at the 16S rRNA gene sequence level. In addition, at the DNA-DNA hybridization level, it exhibited very little similarity either with P. mcmeekinii (30%-35%), P. okeanokoites (26%-29%), or CMS 53or(T) (15%-25%), the three species with which it is closely related at the rRNA gene sequence level (2.5%-2.9%). P. antarcticus also showed only 2.5% difference in its 16S rRNA gene sequence compared with the P. alkanoclasticus sequence. But it was distinctly different from P. alkanoclasticus, which exists only as rods, is mesophilic and phosphatase positive, can hydrolyze starch, cannot utilize succinate, glutamate, or glucose, and cannot acidify glucose. Most important, P. antarcticus and P. alkanoclasticus varied distinctly in their fatty acid composition in that C(15:0), C(15:1), C(16:0), iso-C(16:1), and C(17:0) were present only in P. antarcticus but absent in P. alkanoclasticus. CMS 53or(T), the thirteenth isolate, was also identified as a new species of Planococcus and was assigned the name Planococcus psychrophilus sp. nov. This species was distinctly different from all the reported species, including the new species P. antarcticus, with respect to a number of phenotypic characteristics. At the 16S rRNA gene sequence level, it was closely related to P. okeanokoites (98.1%) and P. mcmeekinii (98%), but with respect to the DNA-DNA hybridization, the similarity was only 35%-36%. The type strain of P. antarcticus is CMS 26or(T) (MTCC 3854; DSM 14505), and that of P. psychrophilus is CMS 530r(T) (MTCC 3812; DSM 14507).

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Year:  2002        PMID: 12072961     DOI: 10.1007/s00792-001-0250-7

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  11 in total

1.  Cultivable bacteria from ancient algal mats from the McMurdo Dry Valleys, Antarctica.

Authors:  Doug E Antibus; Laura G Leff; Brenda L Hall; Jenny L Baeseman; Christopher B Blackwood
Journal:  Extremophiles       Date:  2011-11-08       Impact factor: 2.395

2.  Cold-active chemoorganotrophic bacteria from permanently ice-covered Lake Hoare, McMurdo Dry Valleys, Antarctica.

Authors:  Kate M Clocksin; Deborah O Jung; Michael T Madigan
Journal:  Appl Environ Microbiol       Date:  2007-03-16       Impact factor: 4.792

3.  Culturable diversity of heterotrophic bacteria in Forlidas Pond (Pensacola Mountains) and Lundström Lake (Shackleton Range), Antarctica.

Authors:  Karolien Peeters; Dominic A Hodgson; Peter Convey; Anne Willems
Journal:  Microb Ecol       Date:  2011-03-22       Impact factor: 4.552

4.  Culturable diversity and functional annotation of psychrotrophic bacteria from cold desert of Leh Ladakh (India).

Authors:  Ajar Nath Yadav; Shashwati Ghosh Sachan; Priyanka Verma; Satya Prakash Tyagi; Rajeev Kaushik; Anil K Saxena
Journal:  World J Microbiol Biotechnol       Date:  2014-11-05       Impact factor: 3.312

5.  Genome sequence of the Antarctic psychrophile bacterium Planococcus antarcticus DSM 14505.

Authors:  Abelardo Margolles; Miguel Gueimonde; Borja Sánchez
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

6.  Diversity and distribution of alkaliphilic psychrotolerant bacteria in the Qinghai-Tibet Plateau permafrost region.

Authors:  Gaosen Zhang; Xiaojun Ma; Fujun Niu; Maoxing Dong; Huyuan Feng; Lizhe An; Guodong Cheng
Journal:  Extremophiles       Date:  2007-02-16       Impact factor: 3.035

7.  Characteristics of Planococcus antioxidans sp. nov., an antioxidant-producing strain isolated from the desert soil in the Qinghai-Tibetan Plateau.

Authors:  Binglin Zhang; Ruiqi Yang; Gaosen Zhang; Yang Liu; Dongming Zhang; Wei Zhang; Tuo Chen; Guangxiu Liu
Journal:  Microbiologyopen       Date:  2020-03-11       Impact factor: 3.139

8.  Robust Demarcation of the Family Caryophanaceae (Planococcaceae) and Its Different Genera Including Three Novel Genera Based on Phylogenomics and Highly Specific Molecular Signatures.

Authors:  Radhey S Gupta; Sudip Patel
Journal:  Front Microbiol       Date:  2020-01-14       Impact factor: 5.640

9.  Planktonic and sedimentary bacterial diversity of Lake Sayram in summer.

Authors:  Lei Fang; Lei Chen; Yuan Liu; Wei Tao; Zhongzhe Zhang; Haiying Liu; Yong Tang
Journal:  Microbiologyopen       Date:  2015-08-03       Impact factor: 3.139

10.  Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants.

Authors:  Jong-Hyun Jung; Min-Ho Joe; Dong-Ho Kim; Hyun Park; Jong-Il Choi; Sangyong Lim
Journal:  Stand Genomic Sci       Date:  2018-11-09
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