Literature DB >> 12071692

High throughput methods for gene cloning and expression.

Lynda Dieckman1, Minyi Gu, Lucy Stols, Mark I Donnelly, Frank R Collart.   

Abstract

We outline a high throughput process for the production of bacterial expression clones using automated liquid handlers. The protocol consists of a series of interlinked methods representing liquid manipulations or incubations on various stations of the automation system. The methods employ the ligation-independent cloning approach that enables the simultaneous production of plasmids for different expression systems. The current cloning protocol spans 3 days with a linear throughput of 400 targets per production run. This automated approach enables the production of large numbers of bacterial expression clones and ultimately purified proteins. Although they were developed for structural genomics, these molecular protocols can also be applied in high throughput strategies such as those used for site-specific mutagenesis or protein interaction studies. Copyright 2002 Elsevier Science (USA).

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Year:  2002        PMID: 12071692     DOI: 10.1006/prep.2001.1602

Source DB:  PubMed          Journal:  Protein Expr Purif        ISSN: 1046-5928            Impact factor:   1.650


  70 in total

1.  Autotracing of Escherichia coli acetate CoA-transferase alpha-subunit structure using 3.4 A MAD and 1.9 A native data.

Authors:  S Korolev; O Koroleva; K Petterson; M Gu; F Collart; I Dementieva; A Joachimiak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-11-23

2.  Genome-scale expression of proteins from Bacillus subtilis.

Authors:  S Moy; L Dieckman; M Schiffer; N Maltsev; G-X Yu; F R Collart
Journal:  J Struct Funct Genomics       Date:  2004

3.  Cloning grills: high throughput cloning for structural genomics.

Authors:  Christopher Mehlin; Erica E Boni; Jamie Andreyka; Richard W Terry
Journal:  J Struct Funct Genomics       Date:  2004

4.  Expression screening, protein purification and NMR analysis of human protein domains for structural genomics.

Authors:  G E Folkers; B N M van Buuren; R Kaptein
Journal:  J Struct Funct Genomics       Date:  2004

5.  An automated small-scale protein expression and purification screening provides beneficial information for protein production.

Authors:  Henry Nguyen; Bruno Martinez; Natalia Oganesyan; Rosalind Kim
Journal:  J Struct Funct Genomics       Date:  2004

6.  Crystal structure of Bacillus subtilis YdaF protein: a putative ribosomal N-acetyltransferase.

Authors:  Joseph S Brunzelle; Ruiying Wu; Sergey V Korolev; Frank R Collart; Andrzej Joachimiak; Wayne F Anderson
Journal:  Proteins       Date:  2004-12-01

7.  Structural and functional characterization of three Type B and C chloramphenicol acetyltransferases from Vibrio species.

Authors:  Ashley Alcala; Guadalupe Ramirez; Allan Solis; Youngchang Kim; Kemin Tan; Oscar Luna; Karen Nguyen; Daniel Vazquez; Michael Ward; Min Zhou; Rory Mulligan; Natalia Maltseva; Misty L Kuhn
Journal:  Protein Sci       Date:  2019-12-06       Impact factor: 6.725

8.  Structural studies of ROK fructokinase YdhR from Bacillus subtilis: insights into substrate binding and fructose specificity.

Authors:  B Nocek; A J Stein; R Jedrzejczak; M E Cuff; H Li; L Volkart; A Joachimiak
Journal:  J Mol Biol       Date:  2010-12-23       Impact factor: 5.469

9.  Crystal structure of YfeU protein from Haemophilus influenzae: a predicted etherase involved in peptidoglycan recycling.

Authors:  Y Kim; P Quartey; R Ng; T I Zarembinski; A Joachimiak
Journal:  J Struct Funct Genomics       Date:  2009-02-21

10.  Interrogating the molecular basis for multiple macrolactone ring formation by the pikromycin polyketide synthase.

Authors:  Jeffrey D Kittendorf; Brian J Beck; Tonia J Buchholz; Wolfgang Seufert; David H Sherman
Journal:  Chem Biol       Date:  2007-08
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