Literature DB >> 12068981

Predominant VNTR family of strains of Mycobacterium tuberculosis isolated from South Asian patients.

D M Gascoyne-Binzi1, R E L Barlow, A Essex, R Gelletlie, M A Khan, S Hafiz, T A Collyns, R Frizzell, P M Hawkey.   

Abstract

SETTING: Despite the low incidence of tuberculosis in the UK, some minority ethnic groups, particularly those originating from South Asia, experience very high incidence rates.
OBJECTIVE: Comparison of the variable number tandem repeat (VNTR) profiles of strains of Mycobacterium tuberculosis circulating in an immigrant community in the UK with those found in the country of ethnic origin.
DESIGN: Isolates of M. tuberculosis were collected from samples obtained from patients attending clinics in Leeds and Bradford, UK and Rawalpindi, Pakistan. Strains were compared using VNTR analysis and mixed-linker PCR.
RESULTS: Comparison of VNTR profiles found that one profile (42235) represented 37% of patient isolates from Rawalpindi and 23% of patient isolates in Leeds and Bradford, where it was associated exclusively with patients with South Asian names. A second profile (02235) represented 15% of patient isolates in Leeds and Bradford, and was also exclusively associated with the South Asian community. These profiles could be subdivided by mixed-linker PCR analysis.
CONCLUSION: The VNTR profile 42235 may represent a family of strains commonly found in communities associated with South Asia.

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Year:  2002        PMID: 12068981     DOI: 10.5588/09640569512995

Source DB:  PubMed          Journal:  Int J Tuberc Lung Dis        ISSN: 1027-3719            Impact factor:   2.373


  13 in total

1.  Mycobacterial interspersed repetitive unit typing of Mycobacterium tuberculosis compared to IS6110-based restriction fragment length polymorphism analysis for investigation of apparently clustered cases of tuberculosis.

Authors:  Peter M Hawkey; E Grace Smith; Jason T Evans; Philip Monk; Gerry Bryan; Huda H Mohamed; Madhu Bardhan; R Nicholas Pugh
Journal:  J Clin Microbiol       Date:  2003-08       Impact factor: 5.948

2.  Automated high-throughput mycobacterial interspersed repetitive unit typing of Mycobacterium tuberculosis strains by a combination of PCR and nondenaturing high-performance liquid chromatography.

Authors:  Jason T Evans; Peter M Hawkey; E Grace Smith; Kerstin A Boese; Roderic E Warren; George Hong
Journal:  J Clin Microbiol       Date:  2004-09       Impact factor: 5.948

3.  Genetic diversity, determined on the basis of katG463 and gyrA95 polymorphisms, Spoligotyping, and IS6110 typing, of Mycobacterium tuberculosis complex isolates from Italy.

Authors:  Nicoletta Lari; Laura Rindi; Christophe Sola; Daniela Bonanni; Nalin Rastogi; Enrico Tortoli; Carlo Garzelli
Journal:  J Clin Microbiol       Date:  2005-04       Impact factor: 5.948

4.  Fast ligation-mediated PCR, a fast and reliable method for IS6110-based typing of Mycobacterium tuberculosis complex.

Authors:  Florian Reisig; Kristin Kremer; Beate Amthor; Dick van Soolingen; Walter H Haas
Journal:  J Clin Microbiol       Date:  2005-11       Impact factor: 5.948

5.  Genetic diversity of Mycobacterium tuberculosis in Mbarara, South Western Uganda.

Authors:  J Bazira; M Matte; B B Asiimwe; L M Joloba
Journal:  Afr Health Sci       Date:  2010-12       Impact factor: 0.927

6.  Assessment of population structure and major circulating phylogeographical clades of Mycobacterium tuberculosis complex in Bangladesh suggests a high prevalence of a specific subclade of ancient M. tuberculosis genotypes.

Authors:  Zeaur Rahim; Khadiza Zaman; Adri G M van der Zanden; Marius J Möllers; Dick van Soolingen; Rubhana Raqib; Khalequ Zaman; Vikarunessa Begum; Leen Rigouts; Françoise Portaels; Nalin Rastogi; Christophe Sola
Journal:  J Clin Microbiol       Date:  2007-09-05       Impact factor: 5.948

7.  Use of genome level-informed PCR as a new investigational approach for analysis of outbreak-associated Mycobacterium tuberculosis isolates.

Authors:  Kumar Rajakumar; Jamila Shafi; Rebecca J Smith; Richard A Stabler; Peter W Andrew; Deborah Modha; Gerry Bryant; Philip Monk; Jason Hinds; Philip D Butcher; Michael R Barer
Journal:  J Clin Microbiol       Date:  2004-05       Impact factor: 5.948

8.  A deletion defining a common Asian lineage of Mycobacterium tuberculosis associates with immune subversion.

Authors:  Sandra M Newton; Rebecca J Smith; Katalin A Wilkinson; Mark P Nicol; Natalie J Garton; Karl J Staples; Graham R Stewart; John R Wain; Adrian R Martineau; Sarah Fandrich; Timothy Smallie; Brian Foxwell; Ahmed Al-Obaidi; Jamila Shafi; Kumar Rajakumar; Beate Kampmann; Peter W Andrew; Loems Ziegler-Heitbrock; Michael R Barer; Robert J Wilkinson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-06       Impact factor: 11.205

9.  Genome analysis shows a common evolutionary origin for the dominant strains of Mycobacterium tuberculosis in a UK South Asian community.

Authors:  M Carmen Menéndez; Roger S Buxton; Jason T Evans; Deborah Gascoyne-Binzi; Rachael E L Barlow; Jason Hinds; Peter M Hawkey; M Joseph Colston
Journal:  Tuberculosis (Edinb)       Date:  2007-08-23       Impact factor: 3.131

10.  Modern lineages of Mycobacterium tuberculosis exhibit lineage-specific patterns of growth and cytokine induction in human monocyte-derived macrophages.

Authors:  Rajesh Sarkar; Laura Lenders; Katalin A Wilkinson; Robert J Wilkinson; Mark P Nicol
Journal:  PLoS One       Date:  2012-08-16       Impact factor: 3.240

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