Literature DB >> 12067412

Computational immunology: The coming of age.

Nikolai Petrovsky1, Vladimir Brusic.   

Abstract

The explosive growth in biotechnology combined with major advances in information technology has the potential to radically transform immunology in the postgenomics era. Not only do we now have ready access to vast quantities of existing data, but new data with relevance to immunology are being accumulated at an exponential rate. Resources for computational immunology include biological databases and methods for data extraction, comparison, analysis and interpretation. Publicly accessible biological databases of relevance to immunologists number in the hundreds and are growing daily. The ability to efficiently extract and analyse information from these databases is vital for efficient immunology research. Most importantly, a new generation of computational immunology tools enables modelling of peptide transport by the transporter associated with antigen processing (TAP), modelling of antibody binding sites, identification of allergenic motifs and modelling of T-cell receptor serial triggering.

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Year:  2002        PMID: 12067412     DOI: 10.1046/j.1440-1711.2002.01093.x

Source DB:  PubMed          Journal:  Immunol Cell Biol        ISSN: 0818-9641            Impact factor:   5.126


  15 in total

1.  From ZikV genome to vaccine: in silico approach for the epitope-based peptide vaccine against Zika virus envelope glycoprotein.

Authors:  Aftab Alam; Shahnawaz Ali; Shahzaib Ahamad; Md Zubbair Malik; Romana Ishrat
Journal:  Immunology       Date:  2016-09-07       Impact factor: 7.397

2.  Design of peptide-based epitope vaccine and further binding site scrutiny led to groundswell in drug discovery against Lassa virus.

Authors:  Mohammad Uzzal Hossain; Taimur Md Omar; Arafat Rahman Oany; K M Kaderi Kibria; Abu Zaffar Shibly; Md Moniruzzaman; Syed Raju Ali; Md Monirul Islam
Journal:  3 Biotech       Date:  2018-01-16       Impact factor: 2.406

3.  Dana-Farber repository for machine learning in immunology.

Authors:  Guang Lan Zhang; Hong Huang Lin; Derin B Keskin; Ellis L Reinherz; Vladimir Brusic
Journal:  J Immunol Methods       Date:  2011-07-18       Impact factor: 2.303

4.  Vaccines and Immunoinformatics for Vaccine Design.

Authors:  Shikha Joon; Rajeev K Singla; Bairong Shen
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

5.  Immunological network signatures of cancer progression and survival.

Authors:  Trevor Clancy; Marco Pedicini; Filippo Castiglione; Daniele Santoni; Vegard Nygaard; Timothy J Lavelle; Mikael Benson; Eivind Hovig
Journal:  BMC Med Genomics       Date:  2011-03-31       Impact factor: 3.063

6.  Potential elucidation of a novel CTL epitope in HIV-1 protease by the protease inhibitor resistance mutation L90M.

Authors:  Werner Smidt
Journal:  PLoS One       Date:  2013-08-28       Impact factor: 3.240

7.  Identification and validation of T-cell epitopes in outer membrane protein (OMP) of Salmonella typhi.

Authors:  Arifur Rahman Tanu; Mohammad Arif Ashraf; Md Faruk Hossain; Md Ismail; Hossain Uddin Shekhar
Journal:  Bioinformation       Date:  2014-08-30

8.  Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research.

Authors:  Hong Huang Lin; Surajit Ray; Songsak Tongchusak; Ellis L Reinherz; Vladimir Brusic
Journal:  BMC Immunol       Date:  2008-03-16       Impact factor: 3.615

9.  Highly conserved regions in Ebola virus RNA dependent RNA polymerase may be act as a universal novel peptide vaccine target: a computational approach.

Authors:  Arafat Rahman Oany; Tahmina Sharmin; Afrin Sultana Chowdhury; Tahmina Pervin Jyoti; Md Anayet Hasan
Journal:  In Silico Pharmacol       Date:  2015-08-08

10.  A computational assay to design an epitope-based Peptide vaccine against saint louis encephalitis virus.

Authors:  Md Anayet Hasan; Mehjabeen Hossain; Md Jibran Alam
Journal:  Bioinform Biol Insights       Date:  2013-11-24
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