Literature DB >> 12057900

Rapid visualization at high resolution of pathogens by atomic force microscopy: structural studies of herpes simplex virus-1.

Marco Plomp1, Marcia K Rice, Edward K Wagner, Alexander McPherson, Alexander J Malkin.   

Abstract

A relatively crude preparation of herpes simplex virus was rapidly visualized by atomic force microscopy after exposure to conditions that produced gradual degradation of the virions. Images were obtained of 1) the intact, enveloped virus; 2) the underlying capsid with associated tegument proteins along with fragments of the membrane; 3) the capsomeres composing the capsid and their surface arrangement; 4) damaged and partially degraded capsids with missing capsomeres; and 5) the DNA extruded from damaged virions. These images provide a unique perspective on the structures of individual virus particles. Atomic force microscopy can thus be used as a diagnostic tool to provide a rapid way to obtain high-resolution images of human pathogens from crude preparations. It is a useful technique that complements X-ray-based structure determination, cryo-electron microscopy techniques, and optical microscopies in the field of molecular pathogenesis.

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Year:  2002        PMID: 12057900      PMCID: PMC1850836          DOI: 10.1016/S0002-9440(10)61145-5

Source DB:  PubMed          Journal:  Am J Pathol        ISSN: 0002-9440            Impact factor:   4.307


  10 in total

Review 1.  Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs.

Authors:  T S Baker; N H Olson; S D Fuller
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

2.  Seeing the herpesvirus capsid at 8.5 A.

Authors:  Z H Zhou; M Dougherty; J Jakana; J He; F J Rixon; W Chiu
Journal:  Science       Date:  2000-05-05       Impact factor: 47.728

Review 3.  Imaging of viruses by atomic force microscopy.

Authors:  Yu G Kuznetsov; A J Malkin; R W Lucas; M Plomp; A McPherson
Journal:  J Gen Virol       Date:  2001-09       Impact factor: 3.891

4.  Atomic force microscope.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-03-03       Impact factor: 9.161

5.  Herpes simplex virus glycoproteins associated with different morphological entities projecting from the virion envelope.

Authors:  L M Stannard; A O Fuller; P G Spear
Journal:  J Gen Virol       Date:  1987-03       Impact factor: 3.891

6.  Finding a needle in a haystack: detection of a small protein (the 12-kDa VP26) in a large complex (the 200-MDa capsid of herpes simplex virus).

Authors:  F P Booy; B L Trus; W W Newcomb; J C Brown; J F Conway; A C Steven
Journal:  Proc Natl Acad Sci U S A       Date:  1994-06-07       Impact factor: 11.205

7.  Protein subunit structures in the herpes simplex virus A-capsid determined from 400 kV spot-scan electron cryomicroscopy.

Authors:  Z H Zhou; B V Prasad; J Jakana; F J Rixon; W Chiu
Journal:  J Mol Biol       Date:  1994-09-30       Impact factor: 5.469

8.  Surface processes in the crystallization of turnip yellow mosaic virus visualized by atomic force microscopy.

Authors:  A J Malkin; Y G Kuznetsov; R W Lucas; A McPherson
Journal:  J Struct Biol       Date:  1999-08       Impact factor: 2.867

9.  Visualization of tegument-capsid interactions and DNA in intact herpes simplex virus type 1 virions.

Authors:  Z H Zhou; D H Chen; J Jakana; F J Rixon; W Chiu
Journal:  J Virol       Date:  1999-04       Impact factor: 5.103

10.  Structure of the herpes simplex virus capsid. Molecular composition of the pentons and the triplexes.

Authors:  W W Newcomb; B L Trus; F P Booy; A C Steven; J S Wall; J C Brown
Journal:  J Mol Biol       Date:  1993-07-20       Impact factor: 5.469

  10 in total
  13 in total

1.  Atomic force microscopy investigation of vaccinia virus structure.

Authors:  Y Kuznetsov; P D Gershon; A McPherson
Journal:  J Virol       Date:  2008-05-28       Impact factor: 5.103

Review 2.  Atomic force microscopy in imaging of viruses and virus-infected cells.

Authors:  Yurii G Kuznetsov; Alexander McPherson
Journal:  Microbiol Mol Biol Rev       Date:  2011-06       Impact factor: 11.056

3.  Primary changes of the mechanical properties of Southern Bean Mosaic Virus upon calcium removal.

Authors:  Mareike Zink; Helmut Grubmüller
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

4.  Mechanical disassembly of single virus particles reveals kinetic intermediates predicted by theory.

Authors:  Milagros Castellanos; Rebeca Pérez; Pablo J P Carrillo; Pedro J de Pablo; Mauricio G Mateu
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

5.  The high-resolution architecture and structural dynamics of Bacillus spores.

Authors:  Marco Plomp; Terrance J Leighton; Katherine E Wheeler; Alexander J Malkin
Journal:  Biophys J       Date:  2004-10-22       Impact factor: 4.033

6.  Mechanical properties of the icosahedral shell of southern bean mosaic virus: a molecular dynamics study.

Authors:  Mareike Zink; Helmut Grubmüller
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

7.  Morphogenesis of bacillus spore surfaces.

Authors:  Venkata G R Chada; Erik A Sanstad; Rong Wang; Adam Driks
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490

8.  Structure of intracellular mature vaccinia virus visualized by in situ atomic force microscopy.

Authors:  A J Malkin; A McPherson; P D Gershon
Journal:  J Virol       Date:  2003-06       Impact factor: 5.103

Review 9.  Viral capsids: mechanical characteristics, genome packaging and delivery mechanisms.

Authors:  W H Roos; I L Ivanovska; A Evilevitch; G J L Wuite
Journal:  Cell Mol Life Sci       Date:  2007-06       Impact factor: 9.261

10.  AFM of biological complexes: what can we learn?

Authors:  Maria Gaczynska; Pawel A Osmulski
Journal:  Curr Opin Colloid Interface Sci       Date:  2008-10       Impact factor: 6.448

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