Literature DB >> 12057688

Genomics to fluxomics and physiomics - pathway engineering.

Karl Sanford1, Phillipe Soucaille, Gregg Whited, Gopal Chotani.   

Abstract

Developments in microanalytical methods are enabling quantitative measurement of multiple metabolic fluxes and, in conjunction with transcript and proteomic profiling, are revolutionizing the ability of researchers to manipulate metabolism through pathway engineering in a variety of species. We review recent literature on the advances in genomics, proteomics, fluxomics and computational modeling focused on metabolic pathway engineering applications.

Mesh:

Year:  2002        PMID: 12057688     DOI: 10.1016/s1369-5274(02)00318-1

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  8 in total

1.  CeCaFDB: a curated database for the documentation, visualization and comparative analysis of central carbon metabolic flux distributions explored by 13C-fluxomics.

Authors:  Zhengdong Zhang; Tie Shen; Bin Rui; Wenwei Zhou; Xiangfei Zhou; Chuanyu Shang; Chenwei Xin; Xiaoguang Liu; Gang Li; Jiansi Jiang; Chao Li; Ruiyuan Li; Mengshu Han; Shanping You; Guojun Yu; Yin Yi; Han Wen; Zhijie Liu; Xiaoyao Xie
Journal:  Nucleic Acids Res       Date:  2014-11-11       Impact factor: 16.971

Review 2.  Microbial metabolomics: replacing trial-and-error by the unbiased selection and ranking of targets.

Authors:  Mariët J van der Werf; Renger H Jellema; Thomas Hankemeier
Journal:  J Ind Microbiol Biotechnol       Date:  2005-05-14       Impact factor: 3.346

3.  Compiling a molecular inventory for Mycobacterium bovis BCG at two growth rates: evidence for growth rate-mediated regulation of ribosome biosynthesis and lipid metabolism.

Authors:  D J V Beste; J Peters; T Hooper; C Avignone-Rossa; M E Bushell; J McFadden
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

Review 4.  Emerging applications of metabolomics in drug discovery and precision medicine.

Authors:  David S Wishart
Journal:  Nat Rev Drug Discov       Date:  2016-03-11       Impact factor: 84.694

5.  Characterizing phenotype with tracer based metabolomics.

Authors:  Wai Nang P Lee
Journal:  Metabolomics       Date:  2006-05-20       Impact factor: 4.290

6.  Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications.

Authors:  Kuo-Hsiang Tang; Yinjie J Tang; Robert Eugene Blankenship
Journal:  Front Microbiol       Date:  2011-08-01       Impact factor: 5.640

Review 7.  Metabolic networks in motion: 13C-based flux analysis.

Authors:  Uwe Sauer
Journal:  Mol Syst Biol       Date:  2006-11-14       Impact factor: 11.429

8.  Metabolic networks of microbial systems.

Authors:  Sumana Bhattacharya; Subhra Chakrabarti; Amiya Nayak; Sanjoy K Bhattacharya
Journal:  Microb Cell Fact       Date:  2003-04-11       Impact factor: 5.328

  8 in total

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