Literature DB >> 12057661

Is the anomeric effect an important factor in the rate of adenosine deaminase catalyzed hydrolysis of purine nucleosides? A direct comparison of nucleoside analogues constructed on ribose and carbocyclic templates with equivalent heterocyclic bases selected to promote hydration.

Susana Hernandez1, Harry Ford, Victor E Marquez.   

Abstract

The aglycone of (North)-methanocarbadeoxyadenosine [(N)-MCdA, (5)], a relatively weak substrate for adenosine deaminase (ADA)-relative rate of deamination ca. 100 times lower than adenosine-was modified with substitutions at positions 6 (6-fluoro, compound 6) and 8 (8-aza, compound 7) with the intent to improve the level of hydration and hence hydrolysis by ADA. In these substrates the fused cyclopropane moiety constrains the cyclopentane ring to mimic the conformation of a furanose sugar in the North hemisphere of the pseudorotational cycle, which matches the conformation of the ribose ring of adenosine in complex with ADA. The order of susceptibility to ADA hydrolysis was adenosine>>(N)-MCdA (5) approximately equal to(N)-6F-MCdP (6)>(N)-8-aza-MCdA (7). Despite the known fact that 8-azaadenosine is hydrolyzed twice as fast as adenosine, the corresponding carbocyclic analogue 7 was hydrolyzed at approximately half the rate of the parent 5. These results argue in favor of the critical role of the O(4') oxygen atom and its associated anomeric effect in assisting hydrolysis by ADA.

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Year:  2002        PMID: 12057661     DOI: 10.1016/s0968-0896(02)00099-8

Source DB:  PubMed          Journal:  Bioorg Med Chem        ISSN: 0968-0896            Impact factor:   3.641


  6 in total

1.  Contrasting behavior of conformationally locked carbocyclic nucleosides of adenosine and cytidine as substrates for deaminases.

Authors:  Victor E Marquez; Gottfried K Schroeder; Olaf R Ludek; Maqbool A Siddiqui; Abdallah Ezzitouni; Richard Wolfenden
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2009-05       Impact factor: 1.381

2.  Survey of ribose ring pucker of signaling nucleosides and nucleotides.

Authors:  Veronica Salmaso; Kenneth A Jacobson
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2019-08-28       Impact factor: 1.381

3.  A greener enantioselective synthesis of the antiviral agent North-methanocarbathymidine (N-MCT) from 2-deoxy-d-ribose.

Authors:  Olaf R Ludek; Victor E Marquez
Journal:  Tetrahedron       Date:  2009-10-10       Impact factor: 2.457

4.  South (S)- and North (N)-Methanocarba-7-Deazaadenosine Analogues as Inhibitors of Human Adenosine Kinase.

Authors:  Kiran S Toti; Danielle Osborne; Antonella Ciancetta; Detlev Boison; Kenneth A Jacobson
Journal:  J Med Chem       Date:  2016-07-13       Impact factor: 7.446

5.  Synthesis and conformational analysis of locked carbocyclic analogues of 1,3-diazepinone riboside, a high-affinity cytidine deaminase inhibitor.

Authors:  Olaf R Ludek; Gottfried K Schroeder; Chenzhong Liao; Pamela L Russ; Richard Wolfenden; Victor E Marquez
Journal:  J Org Chem       Date:  2009-08-21       Impact factor: 4.354

6.  Efficient diastereoselective synthesis of a new class of azanucleosides: 2'-homoazanucleosides.

Authors:  Jakob Bouton; Kristof Van Hecke; Serge Van Calenbergh
Journal:  Tetrahedron       Date:  2017-05-29       Impact factor: 2.457

  6 in total

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