Literature DB >> 12056331

The quality of DNA recovered from the archival tissues of atomic bomb survivors is good enough for the single nucleotide polymorphism analysis in spite of the decade-long preservation in formalin.

Yumiko Nitta1, Hideo Tanaka, Yuji Masuda, Masaharu Hoshi.   

Abstract

It is well known that the yield of DNA recovered form tissues preserved in formalin is inversely proportional to the stored duration. How is the quality? We tested the quality of DNA from archival tissues of atomic-bomb survivors stored in formalin for decades with the parameters of gene amplification efficiency by a polymerase chain reaction. All of the DNA extracted from the tissues preserved in formalin for 30 years amplified the 54- and 61-base pairs of the DNA fragments successfully. The direct sequencing of the PCR products confirmed the accurate amplification of the target sequence. A further trial to amplify the longer sequence of 111 base pairs succeeded in 20% of the samples tested. From these results, we propose a new utility of archival samples for the analysis of single nucleotide sequence polymorphism of genes, no matter how long the samples have been preserved in formalin.

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Year:  2002        PMID: 12056331     DOI: 10.1269/jrr.43.65

Source DB:  PubMed          Journal:  J Radiat Res        ISSN: 0449-3060            Impact factor:   2.724


  2 in total

Review 1.  Human papillomavirus tumor infection in esophageal squamous cell carcinoma.

Authors:  Ethan B Ludmir; Sarah J Stephens; Manisha Palta; Christopher G Willett; Brian G Czito
Journal:  J Gastrointest Oncol       Date:  2015-06

2.  The prevalence of human papilloma virus in esophageal squamous cell carcinoma.

Authors:  Sadat Noori; Ahmad Monabati; Abbasali Ghaderi
Journal:  Iran J Med Sci       Date:  2012-06
  2 in total

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