Literature DB >> 12054233

Phylogenetic study of the genus Oceanospirillum based on 16S rRNA and gyrB genes: emended description of the genus Oceanospirillum, description of Pseudospirillum gen. nov., Oceanobacter gen. nov. and Terasakiella gen. nov. and transfer of Oceanospirillum jannaschii and Pseudomonas stanieri to Marinobacterium as Marinobacterium jannaschii comb. nov. and Marinobacterium stanieri comb. no.

Masataka Satomi, Bon Kimura, Tohru Hamada, Shigeaki Harayama, Tateo Fujii.   

Abstract

The phylogenetic relationships of Oceanospirillum strains were analysed by using the nucleotide sequences of 16S rRNA and gyrB genes. Results from sequence analysis demonstrated that the Oceanospirillum core group consisted of four species, Oceanospirillum linum, Oceanospirillum maris, Oceanospirillum beijerinckii and Oceanospirillum multiglobuliferum, with enough distance to separate them as different species. However, four other Oceanospirillum species occupied taxonomic positions separate from the Oceanospirillum core group: Oceanospirillum jannaschii, Oceanospirillum japonicum and Oceanospirillum kriegii in the gamma-Proteobacteria and Oceanospirillum pusillum in the alpha-Proteobacteria. Oceanospirillum jannaschii clustered with Marinobacterium georgiense, Pseudomonas iners and Pseudomonas stanieri on the basis of phylogenetic analysis of 16S rRNA and gyrB genes. The other three species did not cluster with known genera. Also, the sequence similarity values of the gyrB genes between the three subspecies of Oceanospirillum maris and those between the two subspecies of Oceanospirillum beijerinckii were above 99%. The close relationships between the subspecies of Oceanospirillum maris and of Oceanospirillum beijerinckii were further supported by similar physiological properties and high DNA-DNA hybridization values, suggesting that these subspecies should not be regarded as valid. From these results, Oceanospirillum sensu stricto should be defined to consist of Oceanospirillum linum, Oceanospirillum maris, Oceanospirillum beijerinckii and Oceanospirillum multiglobuliferum. We propose to create the following new genera: Pseudospirillum gen. nov. for Oceanospirillum japonicum as Pseudospirillum japonicum comb. nov.; Oceanobacter gen. nov. for Oceanospirillum kriegii as Oceanobacter kriegii comb. nov.; and Terasakiella gen. nov. for Oceanospirillum pusillum as Terasakiella pusilla comb. nov. The transfer is proposed of Oceanospirillum jannaschii and Pseudomonas stanieri to Marinobacterium as Marinobacterium jannaschii comb. nov. and Marinobacterium stanieri comb. nov. Furthermore, Pseudomonas iners should be reclassified as a strain of Marinobacterium georgiense. Finally, the subspecies of Oceanospirillum maris (O. maris subsp. maris, O. maris subsp. hiroshimense and O. maris subsp. williamsae) and Oceanospirillum beijerinckii (O. beijerinckii subsp. beijerinckii and O. beijerinckii subsp. pelagicum) should be combined as Oceanospirillum maris and Oceanospirillum beijerinckii, respectively.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12054233     DOI: 10.1099/00207713-52-3-739

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  12 in total

1.  Interactions between Zn and bacteria in marine tropical coastal sediments.

Authors:  Olivier Pringault; Héléna Viret; Robert Duran
Journal:  Environ Sci Pollut Res Int       Date:  2011-09-28       Impact factor: 4.223

2.  Identification of "Candidatus Thioturbo danicus," a microaerophilic bacterium that builds conspicuous veils on sulfidic sediments.

Authors:  Gerard Muyzer; Esengül Yildirim; Udo van Dongen; Michael Kühl; Roland Thar
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

3.  Pelagitalea pacifica gen. nov., sp. nov., a new marine bacterium isolated from seawater.

Authors:  Hyunsang Lee; Susumu Yoshizawa; Kazuhiro Kogure; Hyun Soo Kim; Jaewoo Yoon
Journal:  Curr Microbiol       Date:  2014-12-07       Impact factor: 2.188

4.  Soda pans of the Pannonian steppe harbor unique bacterial communities adapted to multiple extreme conditions.

Authors:  Attila Szabó; Kristóf Korponai; Csaba Kerepesi; Boglárka Somogyi; Lajos Vörös; Dániel Bartha; Károly Márialigeti; Tamás Felföldi
Journal:  Extremophiles       Date:  2017-04-07       Impact factor: 2.395

5.  Marinobacterium iners (Iizuka and Komagata 1964) comb. nov. arising from the Synonymy of Marinobacterium georgiense González et al. 1997 and Pseudomonas iners Iizuka and Komagata 1964 (Approved Lists 1980).

Authors:  B J Tindall
Journal:  Curr Microbiol       Date:  2019-07-02       Impact factor: 2.188

6.  Oceanobacter mangrovi Sp. Nov., a Novel Poly-β-hydroxybutyrate Accumulating Bacterium Isolated from Mangrove Sediment.

Authors:  Zhaobin Huang; Yuanyuan Huang; Qiliang Lai; Xinlan Chen; Chunming Dong; Xiaozhou Huang
Journal:  Curr Microbiol       Date:  2022-02-12       Impact factor: 2.188

7.  Marinobacterium marisflavi sp. nov., isolated from a costal seawater.

Authors:  Hana Kim; Hyun-Myung Oh; Seung-Jo Yang; Jung-Sook Lee; Jae-Sang Hong; Jang-Cheon Cho
Journal:  Curr Microbiol       Date:  2009-02-03       Impact factor: 2.188

8.  Genome Sequence of a Marine Spirillum, Oceanospirillum multiglobuliferum ATCC 33336T, Isolated from Japan.

Authors:  Joshua G Carney; Ariel M Trachtenberg; Bruce A Rheaume; Joshua D Linnane; Natalie L Pitts; Donald L Mykles; Kyle S MacLea
Journal:  Genome Announc       Date:  2017-05-25

9.  Draft Genome Sequence of the Salt Water Bacterium Oceanospirillum linum ATCC 11336T.

Authors:  Ariel M Trachtenberg; Joshua G Carney; Joshua D Linnane; Bruce A Rheaume; Natalie L Pitts; Donald L Mykles; Kyle S MacLea
Journal:  Genome Announc       Date:  2017-05-25

10.  The complete genome sequence of the plant growth-promoting bacterium Pseudomonas sp. UW4.

Authors:  Jin Duan; Wei Jiang; Zhenyu Cheng; John J Heikkila; Bernard R Glick
Journal:  PLoS One       Date:  2013-03-13       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.