Literature DB >> 12050074

EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database.

V Lombard1, E B Camon, H E Parkinson, P Hingamp, G Stoesser, N Redaschi.   

Abstract

UNLABELLED: The submission of multiple sequence alignment data to EMBL has grown 30-fold in the past 10 years, creating a problem of archiving them. The EBI has developed a new public database of multiple sequence alignments called EMBL-Align. It has a dedicated web-based submission tool, Webin-Align. Together they represent a comprehensive data management solution for alignment data. Webin-Align accepts all the common alignment formats and can display data in CLUSTALW format as well as a new standard EMBL-Align flat file format. The alignments are stored in the EMBL-Align database and can be queried from the EBI SRS (Sequence Retrieval System) server. AVAILABILITY: Webin-Align: http://www.ebi.ac.uk/embl/Submission/align_top.html, EMBL-Align: ftp://ftp.ebi.ac.uk/pub/databases/embl/align, http://srs.ebi.ac.uk/

Entities:  

Mesh：

Year:  2002        PMID： 12050074     DOI： 10.1093/bioinformatics/18.5.763

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  9 in total

1.  The EMBL Nucleotide Sequence Database.

Authors:  Tamara Kulikova; Philippe Aldebert; Nicola Althorpe; Wendy Baker; Kirsty Bates; Paul Browne; Alexandra van den Broek; Guy Cochrane; Karyn Duggan; Ruth Eberhardt; Nadeem Faruque; Maria Garcia-Pastor; Nicola Harte; Carola Kanz; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Michelle McHale; Francesco Nardone; Ville Silventoinen; Peter Stoehr; Guenter Stoesser; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan; Dan Wu; Weimin Zhu; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  The EMBL Nucleotide Sequence Database: major new developments.

Authors:  Guenter Stoesser; Wendy Baker; Alexandra van den Broek; Maria Garcia-Pastor; Carola Kanz; Tamara Kulikova; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Francesco Nardone; Peter Stoehr; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Identification and characterization of spermidine synthase gene from Panax ginseng.

Authors:  Shohana Parvin; Yeon-Ju Kim; Rama Krishna Pulla; S Sathiyamoorthy; Md Giashuddin Miah; Yu-Jin Kim; Neha G Wasnik; Deok-Chun Yang
Journal:  Mol Biol Rep       Date:  2009-08-15       Impact factor: 2.316

4.  Overexpression of Panax ginseng sesquiterpene synthase gene confers tolerance against Pseudomonas syringae pv. tomato in Arabidopsis thaliana.

Authors:  Sung-Joo Yoon; Johan Sukweenadhi; Altanzul Khorolragchaa; Ramya Mathiyalagan; Sathiyamoorthy Subramaniyam; Yeon-Ju Kim; Ho-Bin Kim; Mi-Jung Kim; Yu-Jin Kim; Deok-Chun Yang
Journal:  Physiol Mol Biol Plants       Date:  2016-10-14

5.  Polygalacturonase inhibiting protein: isolation, developmental regulation and pathogen related expression in Panax ginseng C.A. Meyer.

Authors:  Gayathri Sathiyaraj; Sathiyaraj Srinivasan; Sathiyamoorty Subramanium; Yu-Jin Kim; Yeon-Ju Kim; Woo-Saeng Kwon; Deok-Chun Yang
Journal:  Mol Biol Rep       Date:  2009-11-28       Impact factor: 2.316

6.  Evolution of prokaryotic SPFH proteins.

Authors:  Markus Hinderhofer; Christina A Walker; Anke Friemel; Claudia A O Stuermer; Heiko M Möller; Alexander Reuter
Journal:  BMC Evol Biol       Date:  2009-01-12       Impact factor: 3.260

7.  EMBL Nucleotide Sequence Database: developments in 2005.

Authors:  Guy Cochrane; Philippe Aldebert; Nicola Althorpe; Mikael Andersson; Wendy Baker; Alastair Baldwin; Kirsty Bates; Sumit Bhattacharyya; Paul Browne; Alexandra van den Broek; Matias Castro; Karyn Duggan; Ruth Eberhardt; Nadeem Faruque; John Gamble; Carola Kanz; Tamara Kulikova; Charles Lee; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Michelle McHale; Hamish McWilliam; Gaurab Mukherjee; Francesco Nardone; Maria Pilar Garcia Pastor; Siamak Sobhany; Peter Stoehr; Katerina Tzouvara; Robert Vaughan; Dan Wu; Weimin Zhu; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

8.  EMBL Nucleotide Sequence Database in 2006.

Authors:  Tamara Kulikova; Ruth Akhtar; Philippe Aldebert; Nicola Althorpe; Mikael Andersson; Alastair Baldwin; Kirsty Bates; Sumit Bhattacharyya; Lawrence Bower; Paul Browne; Matias Castro; Guy Cochrane; Karyn Duggan; Ruth Eberhardt; Nadeem Faruque; Gemma Hoad; Carola Kanz; Charles Lee; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Dariusz Lorenc; Hamish McWilliam; Gaurab Mukherjee; Francesco Nardone; Maria Pilar Garcia Pastor; Sheila Plaister; Siamak Sobhany; Peter Stoehr; Robert Vaughan; Dan Wu; Weimin Zhu; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2006-12-05       Impact factor: 16.971

9.  The EMBL Nucleotide Sequence Database.

Authors:  Carola Kanz; Philippe Aldebert; Nicola Althorpe; Wendy Baker; Alastair Baldwin; Kirsty Bates; Paul Browne; Alexandra van den Broek; Matias Castro; Guy Cochrane; Karyn Duggan; Ruth Eberhardt; Nadeem Faruque; John Gamble; Federico Garcia Diez; Nicola Harte; Tamara Kulikova; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Michelle McHale; Francesco Nardone; Ville Silventoinen; Siamak Sobhany; Peter Stoehr; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan; Dan Wu; Weimin Zhu; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971
  9 in total

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