Literature DB >> 12047883

Genome annotation techniques: new approaches and challenges.

Alistair G Rust1, Emmanuel Mongin, Ewan Birney.   

Abstract

As more of the human genome draft sequence is finished, and genomes from other organisms begin to be sequenced, the demand for accurate and reliable genome annotation will increase significantly. To facilitate this industrial-scale genome annotation, automated bioinformatics solutions are increasingly required. As a result, automatic genome annotation systems have become more important in gene discovery within recent years. The design of such large-scale bioinformatics systems is an evolving and dynamic field, based on central cores of bioinformatics software tools and relational databases. Not only must these systems efficiently manage and integrate large volumes of genomic data, but they must also deliver accurate gene predictions and effectively distribute annotation data to the biosciences community.

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Year:  2002        PMID: 12047883     DOI: 10.1016/s1359-6446(02)02289-4

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  7 in total

1.  Ensembl 2002: accommodating comparative genomics.

Authors:  M Clamp; D Andrews; D Barker; P Bevan; G Cameron; Y Chen; L Clark; T Cox; J Cuff; V Curwen; T Down; R Durbin; E Eyras; J Gilbert; M Hammond; T Hubbard; A Kasprzyk; D Keefe; H Lehvaslaiho; V Iyer; C Melsopp; E Mongin; R Pettett; S Potter; A Rust; E Schmidt; S Searle; G Slater; J Smith; W Spooner; A Stabenau; J Stalker; E Stupka; A Ureta-Vidal; I Vastrik; E Birney
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  5' Long serial analysis of gene expression (LongSAGE) and 3' LongSAGE for transcriptome characterization and genome annotation.

Authors:  Chia-Lin Wei; Patrick Ng; Kuo Ping Chiu; Chee Hong Wong; Chin Chin Ang; Leonard Lipovich; Edison T Liu; Yijun Ruan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-22       Impact factor: 11.205

3.  Bcheck: a wrapper tool for detecting RNase P RNA genes.

Authors:  Dilmurat Yusuf; Manja Marz; Peter F Stadler; Ivo L Hofacker
Journal:  BMC Genomics       Date:  2010-07-13       Impact factor: 3.969

4.  PeerGAD: a peer-review-based and community-centric web application for viewing and annotating prokaryotic genome sequences.

Authors:  Mark D D'Ascenzo; Alan Collmer; Gregory B Martin
Journal:  Nucleic Acids Res       Date:  2004-06-07       Impact factor: 16.971

5.  PanWeb: A web interface for pan-genomic analysis.

Authors:  Yan Pantoja; Kenny Pinheiro; Allan Veras; Fabrício Araújo; Ailton Lopes de Sousa; Luis Carlos Guimarães; Artur Silva; Rommel T J Ramos
Journal:  PLoS One       Date:  2017-05-24       Impact factor: 3.240

6.  Now and next-generation sequencing techniques: future of sequence analysis using cloud computing.

Authors:  Radhe Shyam Thakur; Rajib Bandopadhyay; Bratati Chaudhary; Sourav Chatterjee
Journal:  Front Genet       Date:  2012-12-11       Impact factor: 4.599

7.  Inside the Pan-genome - Methods and Software Overview.

Authors:  Luis Carlos Guimarães; Jolanta Florczak-Wyspianska; Leandro Benevides de Jesus; Marcus Vinícius Canário Viana; Artur Silva; Rommel Thiago Jucá Ramos; Siomar de Castro Soares; Siomar de Castro Soares
Journal:  Curr Genomics       Date:  2015-08       Impact factor: 2.236

  7 in total

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