Literature DB >> 12038750

Metabonomic assessment of physiological disruptions using 1H-13C HMBC-NMR spectroscopy combined with pattern recognition procedures performed on filtered variables.

Marc-Emmanuel Dumas1, Cécile Canlet, François André, Joseph Vercauteren, Alain Paris.   

Abstract

Metabonomic characterization of long-lasting although weak physiological events such as anabolic disruptions remains poorly investigated. We have validated 1H-13C HMBC-NMR as a suitable generator of instrumental variables that are strongly linked to the concentration of endogenous metabolites in biological fluids. This method is interfaced to multivariate pattern recognition procedures. Fingerprints established from urine sample collected on cattle treated with anabolic steroids were used to validate this method. Four main results arise from this study. (i) 2D NMR is as informative as 1D NMR. (ii) 2D NMR variable clustering highlights successfully a contingent redundancy of variables, although a relevant hierarchical model of statistical correlations covering from structural relationships to physiologic links can also be evidenced. (iii) To enhance pattern recognition performances, we have validated a variable selection algorithm for accurate prediction of unknown individuals belonging to predetermined groups achieved by linear discriminant analysis (LDA). This algorithm synthesizes the whole information contained in the data set by selecting preferentially nonredundant variables. Parameters generating variable subsets are validated by predicted variance efficiency obtained when minimizing error rates calculated by cross-validation methods. (iv) Provided variables are correctly filtered, LDA fairly competes with partial least-squares methods for both classification of individuals and statistical interpretation of metabolic responses obtained in such a physiological disruption context.

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Year:  2002        PMID: 12038750     DOI: 10.1021/ac0156870

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  6 in total

1.  Quantitative analysis of blood plasma metabolites using isotope enhanced NMR methods.

Authors:  G A Nagana Gowda; Fariba Tayyari; Tao Ye; Yuliana Suryani; Siwei Wei; Narasimhamurthy Shanaiah; Daniel Raftery
Journal:  Anal Chem       Date:  2010-09-29       Impact factor: 6.986

Review 2.  Isotope enhanced approaches in metabolomics.

Authors:  G A Nagana Gowda; Narasimhamurthy Shanaiah; Daniel Raftery
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

Review 3.  Metabolomics-based methods for early disease diagnostics.

Authors:  G A Nagana Gowda; Shucha Zhang; Haiwei Gu; Vincent Asiago; Narasimhamurthy Shanaiah; Daniel Raftery
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4.  Metabolomic signatures in elite cyclists: differential characterization of a seeming normal endocrine status regarding three serum hormones.

Authors:  Boris Labrador; François-Xavier Lejeune; Alain Paris; Cécile Canlet; Jérôme Molina; Michel Guinot; Armand Mégret; Michel Rieu; Jean-Christophe Thalabard; Yves Le Bouc
Journal:  Metabolomics       Date:  2021-07-06       Impact factor: 4.290

5.  Immunological and metabolomic impacts of administration of Cry1Ab protein and MON 810 maize in mouse.

Authors:  Karine Adel-Patient; Valeria D Guimaraes; Alain Paris; Marie-Françoise Drumare; Sandrine Ah-Leung; Patricia Lamourette; Marie-Claire Nevers; Cécile Canlet; Jérôme Molina; Hervé Bernard; Christophe Créminon; Jean-Michel Wal
Journal:  PLoS One       Date:  2011-01-27       Impact factor: 3.240

6.  Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation.

Authors:  Helen M Parsons; Christian Ludwig; Ulrich L Günther; Mark R Viant
Journal:  BMC Bioinformatics       Date:  2007-07-02       Impact factor: 3.169

  6 in total

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