Literature DB >> 12034494

The gene TSGA14, adjacent to the imprinted gene MEST, escapes genomic imprinting.

Takahiro Yamada1, Tomohiko Kayashima, Kentaro Yamasaki, Tohru Ohta, Koh ichiro Yoshiura, Naomichi Matsumoto, Seiichiro Fujimoto, Norio Niikawa, Tatsuya Kishino.   

Abstract

We identified the gene TSGA14, encoding the testis-specific protein A14 and located 50 kb proximal to the imprinted gene MEST in a head-to-head orientation. TSGA14 has at least two transcripts: a long-type (l-type) transcript, and a short-type (s-type) transcript. Since the COPG2IT1 gene in the vicinity of MEST has been reported to be imprinted, we presumed that TSGA14 might also be imprinted. We thus analyzed the imprinting status of TSGA14 l-type and s-type transcripts in various fetal tissues. TSGA14 l-type transcript, which consists of 11 exons and encodes a l-type isoform with 373 amino acids, is biallelically expressed in the fetal tissues including the testis. TSGA14 s-type transcript, which consists of three exons and encodes a s-type isoform with 54 amino acids, also showed biallelic expression in the fetal brain and liver. No allele-specific methylation in the TSGA14 CpG island was detected. The fact that COPG2 and TSGA14, both neighbors of MEST, escape genomic imprinting suggests that the 7q32 imprinted region may be small and not similar to other imprinted domains, such as those at 15q11-13 and 11p15.5.

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Year:  2002        PMID: 12034494     DOI: 10.1016/s0378-1119(02)00428-6

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  5 in total

1.  High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genes.

Authors:  Elena Allen; Steve Horvath; Frances Tong; Peter Kraft; Elizabeth Spiteri; Arthur D Riggs; York Marahrens
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-08       Impact factor: 11.205

2.  The imprinted region on human chromosome 7q32 extends to the carboxypeptidase A gene cluster: an imprinted candidate for Silver-Russell syndrome.

Authors:  L Bentley; K Nakabayashi; D Monk; C Beechey; J Peters; Z Birjandi; F E Khayat; M Patel; M A Preece; P Stanier; S W Scherer; G E Moore
Journal:  J Med Genet       Date:  2003-04       Impact factor: 6.318

3.  CEP41 is mutated in Joubert syndrome and is required for tubulin glutamylation at the cilium.

Authors:  Ji Eun Lee; Jennifer L Silhavy; Maha S Zaki; Jana Schroth; Stephanie L Bielas; Sarah E Marsh; Jesus Olvera; Francesco Brancati; Miriam Iannicelli; Koji Ikegami; Andrew M Schlossman; Barry Merriman; Tania Attié-Bitach; Clare V Logan; Ian A Glass; Andrew Cluckey; Carrie M Louie; Jeong Ho Lee; Hilary R Raynes; Isabelle Rapin; Ignacio P Castroviejo; Mitsutoshi Setou; Clara Barbot; Eugen Boltshauser; Stanley F Nelson; Friedhelm Hildebrandt; Colin A Johnson; Daniel A Doherty; Enza Maria Valente; Joseph G Gleeson
Journal:  Nat Genet       Date:  2012-01-15       Impact factor: 38.330

4.  Identification of the imprinted KLF14 transcription factor undergoing human-specific accelerated evolution.

Authors:  Layla Parker-Katiraee; Andrew R Carson; Takahiro Yamada; Philippe Arnaud; Robert Feil; Sayeda N Abu-Amero; Gudrun E Moore; Masahiro Kaneda; George H Perry; Anne C Stone; Charles Lee; Makiko Meguro-Horike; Hiroyuki Sasaki; Keiko Kobayashi; Kazuhiko Nakabayashi; Stephen W Scherer
Journal:  PLoS Genet       Date:  2007-03-12       Impact factor: 5.917

5.  Family-based exome sequencing and case-control analysis implicate CEP41 as an ASD gene.

Authors:  Ashok Patowary; So Yeon Won; Shin Ji Oh; Ryan R Nesbitt; Marilyn Archer; Debbie Nickerson; Wendy H Raskind; Raphael Bernier; Ji Eun Lee; Zoran Brkanac
Journal:  Transl Psychiatry       Date:  2019-01-15       Impact factor: 6.222

  5 in total

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