Literature DB >> 12034457

Biochemical and functional characterization of the cis-spliceosomal U1 small nuclear RNP from Trypanosoma brucei.

Zsofia Palfi1, William S Lane, Albrecht Bindereif.   

Abstract

Recent studies in the trypanosome system have revealed that in addition to trans splicing of a short spliced leader (SL) exon, there is also cis splicing of internal introns. It has been suggested that cis splicing requires base-pairing of U1 small nuclear RNA (snRNA) and the 5' splice site. We have cloned the gene for U1 snRNA from Trypanosoma brucei and characterized the U1 snRNP. Based on immunoprecipitation and direct mass-spectrometric protein analysis the U1 snRNP contains the common Sm core found also in the known trans-spliceosomal snRNPs U2, U4/U6, and U5. The 5' end of U1 snRNA in the U1 snRNP is accessible for and functional in specific recognition of the 5' splice site of the poly(A) polymerase intron.

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Year:  2002        PMID: 12034457     DOI: 10.1016/s0166-6851(02)00044-0

Source DB:  PubMed          Journal:  Mol Biochem Parasitol        ISSN: 0166-6851            Impact factor:   1.759


  10 in total

Review 1.  trans and cis splicing in trypanosomatids: mechanism, factors, and regulation.

Authors:  Xue-hai Liang; Asaf Haritan; Shai Uliel; Shulamit Michaeli
Journal:  Eukaryot Cell       Date:  2003-10

2.  RNA-binding domain proteins in Kinetoplastids: a comparative analysis.

Authors:  Javier De Gaudenzi; Alberto C Frasch; Christine Clayton
Journal:  Eukaryot Cell       Date:  2005-12

3.  Sm core variation in spliceosomal small nuclear ribonucleoproteins from Trypanosoma brucei.

Authors:  Pingping Wang; Zsofia Palfi; Christian Preusser; Stephan Lücke; William S Lane; Christian Kambach; Albrecht Bindereif
Journal:  EMBO J       Date:  2006-09-14       Impact factor: 11.598

4.  The 2'-O-ribose methyltransferase for cap 1 of spliced leader RNA and U1 small nuclear RNA in Trypanosoma brucei.

Authors:  Jesse R Zamudio; Bidyottam Mittra; Silvie Foldynová-Trantírková; Gusti M Zeiner; Julius Lukes; Janusz M Bujnicki; Nancy R Sturm; David A Campbell
Journal:  Mol Cell Biol       Date:  2007-07-02       Impact factor: 4.272

5.  Special Sm core complex functions in assembly of the U2 small nuclear ribonucleoprotein of Trypanosoma brucei.

Authors:  Christian Preusser; Zsofia Palfi; Albrecht Bindereif
Journal:  Eukaryot Cell       Date:  2009-06-19

6.  Functional characterization of three leishmania poly(a) binding protein homologues with distinct binding properties to RNA and protein partners.

Authors:  Tamara D da Costa Lima; Danielle M N Moura; Christian R S Reis; J Ronnie C Vasconcelos; Louise Ellis; Mark Carrington; Regina C B Q Figueiredo; Osvaldo P de Melo Neto
Journal:  Eukaryot Cell       Date:  2010-07-30

Review 7.  The pre-mRNA splicing machinery of trypanosomes: complex or simplified?

Authors:  Arthur Günzl
Journal:  Eukaryot Cell       Date:  2010-06-25

8.  Spliceosomal proteomics in Trypanosoma brucei reveal new RNA splicing factors.

Authors:  Daniela Luz Ambrósio; Ju Huck Lee; Aswini K Panigrahi; Tu Ngoc Nguyen; Regina Maria Barretto Cicarelli; Arthur Günzl
Journal:  Eukaryot Cell       Date:  2009-05-08

9.  U1 small nuclear RNP from Trypanosoma brucei: a minimal U1 snRNA with unusual protein components.

Authors:  Zsofia Palfi; Bernd Schimanski; Arthur Günzl; Stephan Lücke; Albrecht Bindereif
Journal:  Nucleic Acids Res       Date:  2005-04-29       Impact factor: 16.971

10.  Therapeutic activity of modified U1 core spliceosomal particles.

Authors:  Malgorzata Ewa Rogalska; Mojca Tajnik; Danilo Licastro; Erica Bussani; Luca Camparini; Chiara Mattioli; Franco Pagani
Journal:  Nat Commun       Date:  2016-04-04       Impact factor: 14.919

  10 in total

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