Literature DB >> 12032555

The CCPN project: an interim report on a data model for the NMR community.

Rasmus Fogh1, John Ionides, Eldon Ulrich, Wayne Boucher, Wim Vranken, Jens P Linge, Michael Habeck, Wolfgang Rieping, T N Bhat, John Westbrook, Kim Henrick, Gary Gilliland, Helen Berman, Janet Thornton, Michael Nilges, John Markley, Ernest Laue.   

Abstract

A recent workshop discusses the progress toward integrating NMR data into a unifying data model.

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Year:  2002        PMID： 12032555     DOI： 10.1038/nsb0602-416

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN： 1072-8368


  50 in total

1.  BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank.

Authors:  Jurgen F Doreleijers; Steve Mading; Dimitri Maziuk; Kassandra Sojourner; Lei Yin; Jun Zhu; John L Markley; Eldon L Ulrich
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

2.  BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures.

Authors:  Jurgen F Doreleijers; Aart J Nederveen; Wim Vranken; Jundong Lin; Alexandre M J J Bonvin; Robert Kaptein; John L Markley; Eldon L Ulrich
Journal:  J Biomol NMR       Date:  2005-05       Impact factor: 2.835

3.  KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

Authors:  Naohiro Kobayashi; Junji Iwahara; Seizo Koshiba; Tadashi Tomizawa; Naoya Tochio; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
Journal:  J Biomol NMR       Date:  2007-07-18       Impact factor: 2.835

4.  Project management system for structural and functional proteomics: Sesame.

Authors:  Zsolt Zolnai; Peter T Lee; Jing Li; Michael R Chapman; Craig S Newman; George N Phillips; Ivan Rayment; Eldon L Ulrich; Brian F Volkman; John L Markley
Journal:  J Struct Funct Genomics       Date:  2003

5.  Solution structure of a hydrocarbon stapled peptide inhibitor in complex with monomeric C-terminal domain of HIV-1 capsid.

Authors:  Shibani Bhattacharya; Hongtao Zhang; Asim K Debnath; David Cowburn
Journal:  J Biol Chem       Date:  2008-04-16       Impact factor: 5.157

Review 6.  Biomolecular NMR data analysis.

Authors:  Michael R Gryk; Jay Vyas; Mark W Maciejewski
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

7.  Advanced glycation end product recognition by the receptor for AGEs.

Authors:  Jing Xue; Vivek Rai; David Singer; Stefan Chabierski; Jingjing Xie; Sergey Reverdatto; David S Burz; Ann Marie Schmidt; Ralf Hoffmann; Alexander Shekhtman
Journal:  Structure       Date:  2011-05-11       Impact factor: 5.006

8.  Capturing, sharing and analysing biophysical data from protein engineering and protein characterization studies.

Authors:  Damien Farrell; Fergal O'Meara; Michael Johnston; John Bradley; Chresten R Søndergaard; Nikolaj Georgi; Helen Webb; Barbara Mary Tynan-Connolly; Una Bjarnadottir; Tommy Carstensen; Jens Erik Nielsen
Journal:  Nucleic Acids Res       Date:  2010-08-19       Impact factor: 16.971

9.  Straightforward and complete deposition of NMR data to the PDBe.

Authors:  Christopher J Penkett; Glen van Ginkel; Sameer Velankar; Jawahar Swaminathan; Eldon L Ulrich; Steve Mading; Tim J Stevens; Rasmus H Fogh; Aleksandras Gutmanas; Gerard J Kleywegt; Kim Henrick; Wim F Vranken
Journal:  J Biomol NMR       Date:  2010-08-03       Impact factor: 2.835

10.  PDBe: Protein Data Bank in Europe.

Authors:  S Velankar; C Best; B Beuth; C H Boutselakis; N Cobley; A W Sousa Da Silva; D Dimitropoulos; A Golovin; M Hirshberg; M John; E B Krissinel; R Newman; T Oldfield; A Pajon; C J Penkett; J Pineda-Castillo; G Sahni; S Sen; R Slowley; A Suarez-Uruena; J Swaminathan; G van Ginkel; W F Vranken; K Henrick; G J Kleywegt
Journal:  Nucleic Acids Res       Date:  2009-10-25       Impact factor: 16.971
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