Literature DB >> 12031671

Toward the synthesis of artificial proteins: the discovery of an amphiphilic helical peptoid assembly.

Timothy S Burkoth1, Eric Beausoleil, Surinder Kaur, Dahzi Tang, Fred E Cohen, Ronald N Zuckermann.   

Abstract

While nature exploits folded biopolymers to achieve molecular recognition and catalysis, comparable abiological heteropolymer systems have been difficult to create. We synthesized and identified abiological peptoid heteroploymers capable of binding a dye. Using combinatorial synthesis, we constructed a library of 3400 amphiphilic 15-mer peptoids on an ultra-high-capacity beaded support. Individual macrobeads, each containing a single peptoid sequence, were arrayed into plates, cleaved, and screened in aqueous solution to locate dye binding heteropolymer assemblies. Resynthesis and characterization demonstrated the formation of defined helical assemblies as judged by size-exclusion chromatography, circular dichroism, and analytical ultracentrifugation. Inspired by nature's process of sequence variation and natural selection, we identified rare abiological sequence-specific heteropolymers that begin to mimic the structure and functional properties of their biological counterparts.

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Year:  2002        PMID: 12031671     DOI: 10.1016/s1074-5521(02)00140-0

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  15 in total

1.  Fragmentation Patterns and Mechanisms of Singly and Doubly Protonated Peptoids Studied by Collision Induced Dissociation.

Authors:  Jianhua Ren; Yuan Tian; Ekram Hossain; Michael D Connolly
Journal:  J Am Soc Mass Spectrom       Date:  2016-02-01       Impact factor: 3.109

2.  A rapid library screen for tailoring beta-peptide structure and function.

Authors:  Joshua A Kritzer; Nathan W Luedtke; Elizabeth A Harker; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2005-10-26       Impact factor: 15.419

3.  Distinctive circular dichroism signature for 14-helix-bundle formation by beta-peptides.

Authors:  William C Pomerantz; Tami L R Grygiel; Jonathan R Lai; Samuel H Gellman
Journal:  Org Lett       Date:  2008-04-09       Impact factor: 6.005

4.  Construction and conformational behavior of peptoids with cis-amide bond geometry: design of a peptoid with alternate φ, ψ values of inverse PP-II/PP-II and PP-I structures.

Authors:  Fateh Singh Nandel; Radhika Rani Jaswal; Avneet Saini; Vibhuti Nandel; Mohd Shafique
Journal:  J Mol Model       Date:  2014-08-31       Impact factor: 1.810

5.  Electron capture dissociation studies of the fragmentation patterns of doubly protonated and mixed protonated-sodiated peptoids.

Authors:  Bogdan Bogdanov; Xiaoning Zhao; David B Robinson; Jianhua Ren
Journal:  J Am Soc Mass Spectrom       Date:  2014-05-21       Impact factor: 3.109

6.  A threaded loop conformation adopted by a family of peptoid nonamers.

Authors:  Kai Huang; Cindy W Wu; Tracy J Sanborn; James A Patch; Kent Kirshenbaum; Ronald N Zuckermann; Annelise E Barron; Ishwar Radhakrishnan
Journal:  J Am Chem Soc       Date:  2006-02-08       Impact factor: 15.419

7.  Theory for protein folding cooperativity: helix bundles.

Authors:  Kingshuk Ghosh; K A Dill
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

8.  Detection and analysis of chimeric tertiary structures by backbone thioester exchange: packing of an alpha helix against an alpha/beta-peptide helix.

Authors:  Joshua L Price; Erik B Hadley; Jay D Steinkruger; Samuel H Gellman
Journal:  Angew Chem Int Ed Engl       Date:  2010       Impact factor: 15.336

9.  Split-and-pool synthesis and characterization of peptide tertiary amide library.

Authors:  Yu Gao; Thomas Kodadek
Journal:  J Vis Exp       Date:  2014-06-20       Impact factor: 1.355

Review 10.  Structure-function relationships in peptoids: recent advances toward deciphering the structural requirements for biological function.

Authors:  Sarah A Fowler; Helen E Blackwell
Journal:  Org Biomol Chem       Date:  2009-02-11       Impact factor: 3.876

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