Literature DB >> 12016460

Do neighboring lakes share common taxa of bacterioplankton? Comparison of 16S rDNA fingerprints and sequences from three geographic regions.

E S Lindström1, E Leskinen.   

Abstract

Bacterioplankton community composition was studied in 12 lakes in three different geographic regions in Scandinavia using denaturing gradient gel electrophoresis (DGGE) and sequencing of 16S rDNA. Area-specific abundant taxa were found in the lakes in two of the regions. In the region of Uppland the lakes had an alpha-proteobacterium, belonging to the subgroup Alpha V in common. The Alpha V bacteria appeared to be favored by neutral or higher pH values. The lakes in Lappland were found to harbor Actinobacteria, which appeared to be favored in bog lakes. No abundant taxon was found to be in common for the lakes in Svalbard, the third region studied.

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Year:  2002        PMID： 12016460     DOI： 10.1007/s00248-002-0007-6

Source DB:  PubMed          Journal:  Microb Ecol        ISSN： 0095-3628            Impact factor:   4.552


  16 in total

1.  Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.

Authors:  F O Glöckner; B M Fuchs; R Amann
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

2.  Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria.

Authors:  F O Glöckner; E Zaichikov; N Belkova; L Denissova; J Pernthaler; A Pernthaler; R Amann
Journal:  Appl Environ Microbiol       Date:  2000-11       Impact factor: 4.792

3.  Bacterioplankton Community Composition in Five Lakes Differing in Trophic Status and Humic Content.

Authors: 
Journal:  Microb Ecol       Date:  2000-08       Impact factor: 4.552

4.  Spatial differences in bacterioplankton composition along the Catalan coast (NW Mediterranean) assessed by molecular fingerprinting.

Authors: 
Journal:  FEMS Microbiol Ecol       Date:  2000-07-01       Impact factor: 4.194

5.  Investigating Influential Factors on Bacterioplankton Community Composition: Results from a Field Study of Five Mesotrophic Lakes.

Authors:  E.S. Lindström
Journal:  Microb Ecol       Date:  2001-12       Impact factor: 4.552

6.  Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.

Authors:  D J Lane; B Pace; G J Olsen; D A Stahl; M L Sogin; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

Review 7.  Novel techniques for analysing microbial diversity in natural and perturbed environments.

Authors:  V Torsvik; F L Daae; R A Sandaa; L Ovreås
Journal:  J Biotechnol       Date:  1998-09-17       Impact factor: 3.307

8.  Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria.

Authors:  G Zwart; W D Hiorns; B A Methé; M P van Agterveld; R Huismans; S C Nold; J P Zehr; H J Laanbroek
Journal:  Syst Appl Microbiol       Date:  1998-12       Impact factor: 4.022

Review 9.  Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology.

Authors:  G Muyzer; K Smalla
Journal:  Antonie Van Leeuwenhoek       Date:  1998-01       Impact factor: 2.271

10.  Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA.

Authors:  L Ovreås; L Forney; F L Daae; V Torsvik
Journal:  Appl Environ Microbiol       Date:  1997-09       Impact factor: 4.792
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  17 in total

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Authors:  Ulrike Burkert; Falk Warnecke; Dieter Babenzien; Elke Zwirnmann; Jakob Pernthaler
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2.  Within- and between-lake variability in the composition of bacterioplankton communities: investigations using multiple spatial scales.

Authors:  Anthony C Yannarell; Eric W Triplett
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

3.  Temporal patterns in bacterial communities in three temperate lakes of different trophic status.

Authors:  A C Yannarell; A D Kent; G H Lauster; T K Kratz; E W Triplett
Journal:  Microb Ecol       Date:  2003-08-14       Impact factor: 4.552

4.  Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques.

Authors:  Hideyuki Tamaki; Yuji Sekiguchi; Satoshi Hanada; Kazunori Nakamura; Nakao Nomura; Masatoshi Matsumura; Yoichi Kamagata
Journal:  Appl Environ Microbiol       Date:  2005-04       Impact factor: 4.792

5.  Distribution of typical freshwater bacterial groups is associated with pH, temperature, and lake water retention time.

Authors:  Eva S Lindström; Miranda P Kamst-Van Agterveld; Gabriel Zwart
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

6.  Geographic and environmental sources of variation in lake bacterial community composition.

Authors:  Anthony C Yannarell; Eric W Triplett
Journal:  Appl Environ Microbiol       Date:  2005-01       Impact factor: 4.792

7.  Comparison of different denaturing gradient gel electrophoresis primer sets for the study of marine bacterioplankton communities.

Authors:  Olga Sánchez; Josep M Gasol; Ramon Massana; Jordi Mas; Carlos Pedrós-Alió
Journal:  Appl Environ Microbiol       Date:  2007-07-27       Impact factor: 4.792

8.  Bacterial community structure of acid-impacted lakes: what controls diversity?

Authors:  Sascha F Percent; Marc E Frischer; Paul A Vescio; Ellen B Duffy; Vincenzo Milano; Maggie McLellan; Brett M Stevens; Charles W Boylen; Sandra A Nierzwicki-Bauer
Journal:  Appl Environ Microbiol       Date:  2008-02-01       Impact factor: 4.792

9.  Low taxon richness of bacterioplankton in high-altitude lakes of the eastern tibetan plateau, with a predominance of Bacteroidetes and Synechococcus spp.

Authors:  Peng Xing; Martin W Hahn; Qinglong L Wu
Journal:  Appl Environ Microbiol       Date:  2009-09-18       Impact factor: 4.792

Review 10.  A guide to the natural history of freshwater lake bacteria.

Authors:  Ryan J Newton; Stuart E Jones; Alexander Eiler; Katherine D McMahon; Stefan Bertilsson
Journal:  Microbiol Mol Biol Rev       Date:  2011-03       Impact factor: 11.056
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