Literature DB >> 12016064

DOLOP--database of bacterial lipoproteins.

M Madan Babu1, K Sankaran.   

Abstract

UNLABELLED: Bacterial lipoproteins and lipid modification are gaining importance owing to their essential nature, roles in pathogenesis and interesting commercial applications. We have created an exclusive knowledge base for bacterial lipoproteins by processing information from 510 entries to provide a list of 199 distinct lipoproteins with relevant links to molecular details. Features include functional classification, predictive algorithm for query sequences, primary sequence analysis and lists of predicted lipoproteins from 43 completed bacterial genomes along with interactive information exchange facility. AVAILABILITY: The website called Database Of bacterial LipOProteins (DOLOP) is available at http://www.mrc-lmb.cam.ac.uk/genomes/dolop along with additional information on the biosynthetic pathway, supplementary material and other related figures.

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Year:  2002        PMID: 12016064     DOI: 10.1093/bioinformatics/18.4.641

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  43 in total

1.  Spiralin diversity within Iranian strains of Spiroplasma citri.

Authors:  Amin Khanchezar; Laure Béven; Keramat Izadpanah; Mohammad Salehi; Colette Saillard
Journal:  Curr Microbiol       Date:  2013-09-01       Impact factor: 2.188

2.  Psb27, a cyanobacterial lipoprotein, is involved in the repair cycle of photosystem II.

Authors:  Marc M Nowaczyk; Romano Hebeler; Eberhard Schlodder; Helmut E Meyer; Bettina Warscheid; Matthias Rögner
Journal:  Plant Cell       Date:  2006-11-17       Impact factor: 11.277

3.  Interactions between the lipoprotein PilP and the secretin PilQ in Neisseria meningitidis.

Authors:  Seetha V Balasingham; Richard F Collins; Reza Assalkhou; Håvard Homberset; Stephan A Frye; Jeremy P Derrick; Tone Tønjum
Journal:  J Bacteriol       Date:  2007-05-25       Impact factor: 3.490

4.  Structure and ligand binding of the soluble domain of a Thermotoga maritima membrane protein of unknown function TM1634.

Authors:  Clare J McCleverty; Linda Columbus; Andreas Kreusch; Scott A Lesley
Journal:  Protein Sci       Date:  2008-03-27       Impact factor: 6.725

5.  HxcQ liposecretin is self-piloted to the outer membrane by its N-terminal lipid anchor.

Authors:  Véronique Viarre; Eric Cascales; Geneviève Ball; Gérard P F Michel; Alain Filloux; Romé Voulhoux
Journal:  J Biol Chem       Date:  2009-10-08       Impact factor: 5.157

6.  Characterization of the immunogenic and antigenic potential of putative lipoproteins from Leptospira interrogans.

Authors:  Daiane D Hartwig; Fabiana K Seixas; Gustavo M Cerqueira; Alan J A McBride; Odir A Dellagostin
Journal:  Curr Microbiol       Date:  2011-01-11       Impact factor: 2.188

7.  Identification and analysis of polyserine linker domains in prokaryotic proteins with emphasis on the marine bacterium Microbulbifer degradans.

Authors:  Michael B Howard; Nathan A Ekborg; Larry E Taylor; Steven W Hutcheson; Ronald M Weiner
Journal:  Protein Sci       Date:  2004-04-09       Impact factor: 6.725

8.  Chitinase B of "Microbulbifer degradans" 2-40 contains two catalytic domains with different chitinolytic activities.

Authors:  Michael B Howard; Nathan A Ekborg; Larry E Taylor; Ronald M Weiner; Steven W Hutcheson
Journal:  J Bacteriol       Date:  2004-03       Impact factor: 3.490

Review 9.  Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome.

Authors:  Juan Javier Díaz-Mejía; Mohan Babu; Andrew Emili
Journal:  FEMS Microbiol Rev       Date:  2008-11-27       Impact factor: 16.408

10.  Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb.

Authors:  Kevin Nagel; Antonio Jimeno-Yepes; Dietrich Rebholz-Schuhmann
Journal:  BMC Bioinformatics       Date:  2009-08-27       Impact factor: 3.169

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