Literature DB >> 12015147

A new zinc binding fold underlines the versatility of zinc binding modules in protein evolution.

Belinda K Sharpe1, Jacqueline M Matthews, Ann H Y Kwan, Anthea Newton, David A Gell, Merlin Crossley, Joel P Mackay.   

Abstract

Many different zinc binding modules have been identified. Their abundance and variety suggests that the formation of zinc binding folds might be relatively common. We have determined the structure of CH1(1), a 27-residue peptide derived from the first cysteine/histidine-rich region (CH1) of CREB binding protein (CBP). This peptide forms a highly ordered zinc-dependent fold that is distinct from known folds. The structure differs from a subsequently determined structure of a larger region from the CH3 region of CBP, and the CH1(1) fold probably represents a nonphysiologically active form. Despite this, the fold is thermostable and tolerant to both multiple alanine mutations and changes in the zinc-ligand spacing. Our data support the idea that zinc binding domains may arise frequently. Additionally, such structures may prove useful as scaffolds for protein design, given their stability and robustness.

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Year:  2002        PMID: 12015147     DOI: 10.1016/s0969-2126(02)00757-8

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  9 in total

1.  Deciphering metal ion preference and primary coordination sphere robustness of a designed zinc finger with high-resolution mass spectrometry.

Authors:  Mikko Laitaoja; Sari Isoniemi; Jarkko Valjakka; István M Mándity; Janne Jänis
Journal:  Protein Sci       Date:  2016-10-26       Impact factor: 6.725

2.  Ligand binding and allostery can emerge simultaneously.

Authors:  Jing Liang; Jin Ryoun Kim; Jason T Boock; Thomas J Mansell; Marc Ostermeier
Journal:  Protein Sci       Date:  2007-03-30       Impact factor: 6.725

3.  Substrate tRNA recognition mechanism of a multisite-specific tRNA methyltransferase, Aquifex aeolicus Trm1, based on the X-ray crystal structure.

Authors:  Takako Awai; Anna Ochi; Toru Sengoku; Akira Hirata; Yoshitaka Bessho; Shigeyuki Yokoyama; Hiroyuki Hori
Journal:  J Biol Chem       Date:  2011-08-15       Impact factor: 5.157

4.  A strong 13C chemical shift signature provides the coordination mode of histidines in zinc-binding proteins.

Authors:  Pierre Barraud; Mario Schubert; Frédéric H-T Allain
Journal:  J Biomol NMR       Date:  2012-04-17       Impact factor: 2.835

5.  Characterization of the cofactor-induced folding mechanism of a zinc-binding peptide using computationally designed mutants.

Authors:  Jia Tang; Seung-Gu Kang; Jeffery G Saven; Feng Gai
Journal:  J Mol Biol       Date:  2009-04-08       Impact factor: 5.469

6.  PONDR-FIT: a meta-predictor of intrinsically disordered amino acids.

Authors:  Bin Xue; Roland L Dunbrack; Robert W Williams; A Keith Dunker; Vladimir N Uversky
Journal:  Biochim Biophys Acta       Date:  2010-01-25

7.  ZIP4 regulates pancreatic cancer cell growth by activating IL-6/STAT3 pathway through zinc finger transcription factor CREB.

Authors:  Yuqing Zhang; Uddalak Bharadwaj; Craig D Logsdon; Changyi Chen; Qizhi Yao; Min Li
Journal:  Clin Cancer Res       Date:  2010-02-16       Impact factor: 12.531

Review 8.  Modulation of epigenetic targets for anticancer therapy: clinicopathological relevance, structural data and drug discovery perspectives.

Authors:  Federico Andreoli; Arménio Jorge Moura Barbosa; Marco Daniele Parenti; Alberto Del Rio
Journal:  Curr Pharm Des       Date:  2013       Impact factor: 3.310

9.  Non-native fold of the putative VPS39 zinc finger domain.

Authors:  Benjamin G Butt; Edward J Scourfield; Stephen C Graham
Journal:  Wellcome Open Res       Date:  2020-07-01
  9 in total

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