Literature DB >> 12009912

Electrostatic interactions in an integral membrane protein.

E T Johnson1, W W Parson.   

Abstract

The effects of charge-charge interactions on the midpoint reduction potential (E(m)()) of the primary electron donor (P) in the photosynthetic reaction center of Rhodobacter sphaeroides were investigated by introducing mutations of ionizable amino acids at selected sites. The mutations were designed to alter the electrostatic environment of P, a bacteriochlorophyll dimer, without greatly affecting its structure or molecular orbitals. Two arginine residues at homologous positions in the L and M subunits [residues (L135) and (M164)], Asp (L155), Tyr (L164), and Cys (L247) were changed independently. Arginine (L135) was replaced by Lys, Leu, Gln, or Glu; Arg (M164), by Leu or Glu; Asp (L155), by Asn; Tyr (L164), by Phe; and Cys (L247), by Lys or Asp. The R(L135)E/C(L247)K double mutant also was made. The shift in the E(m)() of P/P(+) was measured in each mutant and was compared with the effect predicted by electrostatics calculations using several different computational approaches. A simple distance-dependent dielectric screening factor reproduced the effects remarkably well. By contrast, microscopic methods that considered the reaction field in the protein and solvent but did not include explicit counterions overestimated the changes in the E(m)() considerably. Including counterions for the charged residues reduced the calculated effects of the mutations in molecular dynamics calculations. The results show that electrostatic interactions of P with ionizable amino acid residues are strongly screened, and suggest that counterions make major contributions to this screening. The screening also could reflect penetration of water or other relaxations not taken into account because of incomplete sampling of configurational space.

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Year:  2002        PMID: 12009912     DOI: 10.1021/bi012131y

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  18 in total

1.  What really prevents proton transport through aquaporin? Charge self-energy versus proton wire proposals.

Authors:  Anton Burykin; Arieh Warshel
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

2.  Structural, dynamic, and energetic aspects of long-range electron transfer in photosynthetic reaction centers.

Authors:  Jan M Kriegl; G Ulrich Nienhaus
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-22       Impact factor: 11.205

Review 3.  The evolutionary pathway from anoxygenic to oxygenic photosynthesis examined by comparison of the properties of photosystem II and bacterial reaction centers.

Authors:  J P Allen; J C Williams
Journal:  Photosynth Res       Date:  2010-05-07       Impact factor: 3.573

4.  Inverting the selectivity of aquaporin 6: gating versus direct electrostatic interaction.

Authors:  Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-31       Impact factor: 11.205

5.  Molecular dynamics of a protein surface: ion-residues interactions.

Authors:  Ran Friedman; Esther Nachliel; Menachem Gutman
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

6.  Through the channel and around the channel: Validating and comparing microscopic approaches for the evaluation of free energy profiles for ion penetration through ion channels.

Authors:  Mitsunori Kato; Arieh Warshel
Journal:  J Phys Chem B       Date:  2005-10-20       Impact factor: 2.991

7.  Effect of mutation of carboxyl side-chain amino acids near the heme on the midpoint potentials and ligand binding constants of nitrophorin 2 and its NO, histamine, and imidazole complexes.

Authors:  Robert E Berry; Maxim N Shokhirev; Arthur Y W Ho; Fei Yang; Tatiana K Shokhireva; Hongjun Zhang; Andrzej Weichsel; William R Montfort; F Ann Walker
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

8.  The L(M196)H mutation in Rhodobacter sphaeroides reaction center results in new electrostatic interactions.

Authors:  Tatiana Y Fufina; Lyudmila G Vasilieva; Azat G Gabdulkhakov; Vladimir A Shuvalov
Journal:  Photosynth Res       Date:  2014-12-06       Impact factor: 3.573

9.  EPR, ENDOR, and special TRIPLE measurements of P(*+) in wild type and modified reaction centers from Rb. sphaeroides.

Authors:  J P Allen; J M Cordova; C C Jolley; T A Murray; J W Schneider; N W Woodbury; J C Williams; J Niklas; G Klihm; M Reus; W Lubitz
Journal:  Photosynth Res       Date:  2008-09-26       Impact factor: 3.573

10.  The energetics of the primary proton transfer in bacteriorhodopsin revisited: it is a sequential light-induced charge separation after all.

Authors:  Sonja Braun-Sand; Pankaz K Sharma; Zhen T Chu; Andrei V Pisliakov; Arieh Warshel
Journal:  Biochim Biophys Acta       Date:  2008-03-14
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