Literature DB >> 12005885

Zero-temperature properties of RNA secondary structures.

Enzo Marinari1, Andrea Pagnani, Federico Ricci-Tersenghi.   

Abstract

We analyze different microscopic RNA models at zero temperature. We discuss both the most simple model, which suffers a large degeneracy of the ground state, and models in which the degeneracy has been removed in a more or less severe manner. We calculate low-energy density of states using a coupling perturbing method, where the ground state of a modified Hamiltonian, that repels the original ground state, is determined. We evaluate scaling exponents starting from measurements of overlaps and energy differences. In the case of models without accidental degeneracy of the ground state we are able to clearly establish the existence of a glassy phase with theta approximately 1/3. 87.15.Aa, 64.60.Fr

Mesh:

Substances:

Year:  2002        PMID: 12005885     DOI: 10.1103/PhysRevE.65.041919

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

1.  Scaling and universality in continuous length combinatorial optimization.

Authors:  David Aldous; Allon G Percus
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-22       Impact factor: 11.205

2.  Thermodynamic and kinetic aspects of RNA pulling experiments.

Authors:  M Manosas; F Ritort
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

3.  Dynamics of intramolecular recognition: base-pairing in DNA/RNA near and far from equilibrium.

Authors:  R Bundschuh; U Gerland
Journal:  Eur Phys J E Soft Matter       Date:  2006-03-07       Impact factor: 1.890

4.  Unified approach to partition functions of RNA secondary structures.

Authors:  Ralf Bundschuh
Journal:  J Math Biol       Date:  2013-11-01       Impact factor: 2.259

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.