Literature DB >> 11999375

The western red cedar (Thuja plicata) 8-8' DIRIGENT family displays diverse expression patterns and conserved monolignol coupling specificity.

Myoung K Kim1, Jae-Heung Jeon, Masayuki Fujita, Laurence B Davin, Norman G Lewis.   

Abstract

The isolation and characterization of a multigene family of the first class of dirigent proteins (namely that mainly involved in 8-8' coupling leading to (+)-pinoresinol in this case) is reported, this comprising of nine western red cedar (Thuja plicata) DIRIGENT genes (DIR1-9) of 72-99.5% identity to each other. Their corresponding cDNA clones had coding regions for 180-183 amino acids with each having a predicted molecular mass of ca. 20 kDa including the signal peptide. Real time-PCR established that the DIRIGENT isovariants were differentially expressed during growth and development of T. plicata (P < 0.05). The phylogenetic relationships and the rates and patterns of nucleotide substitution suggest that the DIRIGENT gene may have evolved via paralogous expansion at an early stage of vascular plant diversification. Thereafter, western red cedar paralogues have maintained an high homogeneity presumably via a concerted evolutionary mode. This, in turn, is assumed to be the driving force for the differential formation of 8-8'-linked pinoresinol derived (poly)lignans in the needles, stems, bark and branches, as well as for massive accumulation of 8-8'-linked plicatic acid-derived (poly)lignans in heartwood.

Entities:  

Keywords:  NASA Discipline Plant Biology; Non-NASA Center

Mesh:

Substances:

Year:  2002        PMID: 11999375     DOI: 10.1023/a:1014940930703

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  30 in total

Review 1.  Lignification and lignin topochemistry - an ultrastructural view.

Authors:  L A Donaldson
Journal:  Phytochemistry       Date:  2001-07       Impact factor: 4.072

Review 2.  The biosynthesis of monolignols: a "metabolic grid", or independent pathways to guaiacyl and syringyl units?

Authors:  R A Dixon; F Chen; D Guo; K Parvathi
Journal:  Phytochemistry       Date:  2001-08       Impact factor: 4.072

3.  Robustness in simple biochemical networks.

Authors:  N Barkai; S Leibler
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4.  Stereoselective bimolecular phenoxy radical coupling by an auxiliary (dirigent) protein without an active center.

Authors:  L B Davin; H B Wang; A L Crowell; D L Bedgar; D M Martin; S Sarkanen; N G Lewis
Journal:  Science       Date:  1997-01-17       Impact factor: 47.728

5.  Abnormal lignin in a loblolly pine mutant.

Authors:  J Ralph; J J MacKay; R D Hatfield; D M O'Malley; R W Whetten; R R Sederoff
Journal:  Science       Date:  1997-07-11       Impact factor: 47.728

6.  Unbiased estimation of the rates of synonymous and nonsynonymous substitution.

Authors:  W H Li
Journal:  J Mol Evol       Date:  1993-01       Impact factor: 2.395

Review 7.  A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes.

Authors:  W H Li; C I Wu; C C Luo
Journal:  Mol Biol Evol       Date:  1985-03       Impact factor: 16.240

8.  Dirigent proteins and dirigent sites in lignifying tissues.

Authors:  V Burlat; M Kwon; L B Davin; N G Lewis
Journal:  Phytochemistry       Date:  2001-07       Impact factor: 4.072

9.  Differential inhibition of reverse transcriptase and cellular DNA polymerase-alpha activities by lignans isolated from Chinese herbs, Phyllanthus myrtifolius Moon, and tannins from Lonicera japonica Thunb and Castanopsis hystrix.

Authors:  C W Chang; M T Lin; S S Lee; K C Liu; F L Hsu; J Y Lin
Journal:  Antiviral Res       Date:  1995-08       Impact factor: 5.970

10.  Sequence-based identification of T-DNA insertion mutations in Arabidopsis: actin mutants act2-1 and act4-1.

Authors:  E C McKinney; N Ali; A Traut; K A Feldmann; D A Belostotsky; J M McDowell; R B Meagher
Journal:  Plant J       Date:  1995-10       Impact factor: 6.417

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  21 in total

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Authors:  Ben Bubner; Ian T Baldwin
Journal:  Plant Cell Rep       Date:  2004-09-11       Impact factor: 4.570

2.  Functional analysis of all nonribosomal peptide synthetases in Cochliobolus heterostrophus reveals a factor, NPS6, involved in virulence and resistance to oxidative stress.

Authors:  Bee-Na Lee; Scott Kroken; David Y T Chou; Barbara Robbertse; O C Yoder; B Gillian Turgeon
Journal:  Eukaryot Cell       Date:  2005-03

3.  Identification, classification and transcriptional profiles of dirigent domain-containing proteins in sugarcane.

Authors:  Paula Macedo Nobile; Alexandra Bottcher; Juliana L S Mayer; Michael S Brito; Ivan A Dos Anjos; Marcos Guimarães de Andrade Landell; Renato Vicentini; Silvana Creste; Diego Mauricio Riaño-Pachón; Paulo Mazzafera
Journal:  Mol Genet Genomics       Date:  2017-07-11       Impact factor: 3.291

4.  Sugarcane DIRIGENT and O-methyltransferase promoters confer stem-regulated gene expression in diverse monocots.

Authors:  Mona B Damaj; Siva P Kumpatla; Chandrakanth Emani; Phillip D Beremand; Avutu S Reddy; Keerti S Rathore; Marco T Buenrostro-Nava; Ian S Curtis; Terry L Thomas; T Erik Mirkov
Journal:  Planta       Date:  2010-03-30       Impact factor: 4.116

5.  Putting bugs to the blush: metabolic engineering for phenylpropanoid-derived products in microorganisms.

Authors:  Philana V van Summeren-Wesenhagen; Jan Marienhagen
Journal:  Bioengineered       Date:  2013-11-18       Impact factor: 3.269

6.  Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling.

Authors:  Rosanne E Casu; Christine M Dimmock; Scott C Chapman; Christopher P L Grof; C Lynne McIntyre; Graham D Bonnett; John M Manners
Journal:  Plant Mol Biol       Date:  2004-03       Impact factor: 4.076

7.  Dirigent proteins in conifer defense: gene discovery, phylogeny, and differential wound- and insect-induced expression of a family of DIR and DIR-like genes in spruce (Picea spp.).

Authors:  Steven Ralph; Ji-Young Park; Jörg Bohlmann; Shawn D Mansfield
Journal:  Plant Mol Biol       Date:  2006-01       Impact factor: 4.076

8.  Opposite stereoselectivities of dirigent proteins in Arabidopsis and schizandra species.

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9.  Functional characterization of the pinoresinol-lariciresinol reductase-2 gene reveals its roles in yatein biosynthesis and flax defense response.

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Journal:  Planta       Date:  2017-04-27       Impact factor: 4.116

10.  A genome-wide analysis of the flax (Linum usitatissimum L.) dirigent protein family: from gene identification and evolution to differential regulation.

Authors:  Cyrielle Corbin; Samantha Drouet; Lucija Markulin; Daniel Auguin; Éric Lainé; Laurence B Davin; John R Cort; Norman G Lewis; Christophe Hano
Journal:  Plant Mol Biol       Date:  2018-04-30       Impact factor: 4.076

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