Literature DB >> 11997334

Biomedical applications and studies of molecular evolution: a proposal for a primate genomic library resource.

Evan E Eichler1, Pieter J DeJong.   

Abstract

The anticipated completion of two of the most biomedically relevant genomes, mouse and human, within the next three years provides an unparalleled opportunity for the large-scale exploration of genome evolution. Targeted sequencing of genomic regions in a panel of primate species and comparison to reference genomes will provide critical insight into the nature of single-base pair variation, mechanisms of chromosomal rearrangement, patterns of selection, and species adaptation. Although not recognized as model "genetic organisms" because of their longevity and low fecundity, 30 of the approximately 300 primate species are targets of biomedical research. The existence of a human reference sequence and genomic primate BAC libraries greatly facilitates the recovery of genes/genomic regions of high biological interest because of an estimated maximum neutral nucleotide sequence divergence of 25%. Primate species, therefore, may be regarded as the ideal model "genomic organisms". Based on existing BAC library resources, we propose the construction of a panel of primate BAC libraries from phylogenetic anchor species for the purpose of comparative medicine as well as studies of genome evolution.

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Year:  2002        PMID: 11997334     DOI: 10.1101/gr.250102

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  15 in total

1.  Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome.

Authors:  Ge Liu; Shaying Zhao; Jeffrey A Bailey; S Cenk Sahinalp; Can Alkan; Eray Tuzun; Eric D Green; Evan E Eichler
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

2.  The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research.

Authors:  Xiang Song; Jose Luis Goicoechea; Jetty S S Ammiraju; Meizhong Luo; Ruifeng He; Jinke Lin; So-Jeong Lee; Nicholas Sisneros; Tom Watts; David A Kudrna; Wolfgang Golser; Elizabeth Ashley; Kristi Collura; Michele Braidotti; Yeisoo Yu; Luciano M Matzkin; Bryant F McAllister; Therese Ann Markow; Rod A Wing
Journal:  Genetics       Date:  2011-02-14       Impact factor: 4.562

3.  PiggyBac-ing on a primate genome: novel elements, recent activity and horizontal transfer.

Authors:  Heidi J T Pagan; Jeremy D Smith; Robert M Hubley; David A Ray
Journal:  Genome Biol Evol       Date:  2010-07-12       Impact factor: 3.416

4.  Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions.

Authors:  Stefan Kirsch; Claudia Münch; Zhaoshi Jiang; Ze Cheng; Lin Chen; Christiane Batz; Evan E Eichler; Werner Schempp
Journal:  Genome Res       Date:  2008-04-29       Impact factor: 9.043

5.  Genetic divergence of the rhesus macaque major histocompatibility complex.

Authors:  Riza Daza-Vamenta; Gustavo Glusman; Lee Rowen; Brandon Guthrie; Daniel E Geraghty
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

6.  Construction, characterization and chromosomal mapping of bacterial artificial chromosome (BAC) library of Yunnan snub-nosed monkey (Rhinopithecus bieti).

Authors:  Huai-Liang Xu; Ya-Ping Qian; Wen-Hui Nie; Jian-Xiang Chi; Feng-Tang Yang; Bing Su
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

7.  Spontaneous pathology of the common marmoset (Callithrix jacchus) and tamarins (Saguinus oedipus, Saguinus mystax).

Authors:  John M David; Edward J Dick; Gene B Hubbard
Journal:  J Med Primatol       Date:  2009-06-10       Impact factor: 0.667

8.  Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee.

Authors:  Mario Ventura; Claudia R Catacchio; Can Alkan; Tomas Marques-Bonet; Saba Sajjadian; Tina A Graves; Fereydoun Hormozdiari; Arcadi Navarro; Maika Malig; Carl Baker; Choli Lee; Emily H Turner; Lin Chen; Jeffrey M Kidd; Nicoletta Archidiacono; Jay Shendure; Richard K Wilson; Evan E Eichler
Journal:  Genome Res       Date:  2011-06-17       Impact factor: 9.043

9.  Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization.

Authors:  Devin P Locke; Richard Segraves; Lucia Carbone; Nicoletta Archidiacono; Donna G Albertson; Daniel Pinkel; Evan E Eichler
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

Review 10.  Sequencing primate genomes: what have we learned?

Authors:  Tomas Marques-Bonet; Oliver A Ryder; Evan E Eichler
Journal:  Annu Rev Genomics Hum Genet       Date:  2009       Impact factor: 8.929

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