Literature DB >> 11988763

Genealogical trees, coalescent theory and the analysis of genetic polymorphisms.

Noah A Rosenberg1, Magnus Nordborg.   

Abstract

Improvements in genotyping technologies have led to the increased use of genetic polymorphism for inference about population phenomena, such as migration and selection. Such inference presents a challenge, because polymorphism data reflect a unique, complex, non-repeatable evolutionary history. Traditional analysis methods do not take this into account. A stochastic process known as the 'coalescent' presents a coherent statistical framework for analysis of genetic polymorphisms.

Mesh:

Year:  2002        PMID: 11988763     DOI: 10.1038/nrg795

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  137 in total

1.  A coalescent model of recombination hotspots.

Authors:  Carsten Wiuf; David Posada
Journal:  Genetics       Date:  2003-05       Impact factor: 4.562

2.  The impact of genomics on the study of natural variation in Arabidopsis.

Authors:  Justin O Borevitz; Magnus Nordborg
Journal:  Plant Physiol       Date:  2003-06       Impact factor: 8.340

3.  On the use of star-shaped genealogies in inference of coalescence times.

Authors:  Noah A Rosenberg; Aaron E Hirsh
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

Review 4.  Computer simulations: tools for population and evolutionary genetics.

Authors:  Sean Hoban; Giorgio Bertorelle; Oscar E Gaggiotti
Journal:  Nat Rev Genet       Date:  2012-01-10       Impact factor: 53.242

5.  Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis.

Authors:  David Bryant; Remco Bouckaert; Joseph Felsenstein; Noah A Rosenberg; Arindam RoyChoudhury
Journal:  Mol Biol Evol       Date:  2012-03-14       Impact factor: 16.240

6.  Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna.

Authors:  B R Barber; J Klicka
Journal:  Proc Biol Sci       Date:  2010-04-21       Impact factor: 5.349

7.  Mitochondrial DNA variation in the malaria vector Anopheles minimus across China, Thailand and Vietnam: evolutionary hypothesis, population structure and population history.

Authors:  B Chen; P M Pedro; R E Harbach; P Somboon; C Walton; R K Butlin
Journal:  Heredity (Edinb)       Date:  2010-06-02       Impact factor: 3.821

Review 8.  Reconciling the analysis of IBD and IBS in complex trait studies.

Authors:  Joseph E Powell; Peter M Visscher; Michael E Goddard
Journal:  Nat Rev Genet       Date:  2010-09-28       Impact factor: 53.242

9.  Inference Under a Wright-Fisher Model Using an Accurate Beta Approximation.

Authors:  Paula Tataru; Thomas Bataillon; Asger Hobolth
Journal:  Genetics       Date:  2015-08-26       Impact factor: 4.562

10.  Coalescent Times and Patterns of Genetic Diversity in Species with Facultative Sex: Effects of Gene Conversion, Population Structure, and Heterogeneity.

Authors:  Matthew Hartfield; Stephen I Wright; Aneil F Agrawal
Journal:  Genetics       Date:  2015-11-19       Impact factor: 4.562

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