Literature DB >> 11984852

Pure component spectral reconstruction from mixture data using SVD, global entropy minimization, and simulated annealing. Numerical investigations of admissible objective functions using a synthetic 7-species data set.

Effendi Widjaja1, Marc Garland.   

Abstract

A combination of singular value decomposition, entropy minimization, and simulated annealing was applied to a synthetic 7-species spectroscopic data set with added white noise. The pure spectra were highly overlapping. Global minima for selected objective functions were obtained for the transformation of the first seven right singular vectors. Simple Shannon type entropy functions were used in the objective functions and realistic physical constraints were imposed in the penalties. It was found that good first approximations for the pure component spectra could be obtained without the use of any a priori information. The present method out performed the two widely used routines, namely Simplisma and OPA-ALS, as well as IPCA. These results indicate that a combination of SVD, entropy minimization, and simulated annealing is a potentially powerful tool for spectral reconstructions from large real experimental systems. Copyright 2002 Wiley Periodicals, Inc.

Entities:  

Year:  2002        PMID: 11984852     DOI: 10.1002/jcc.10080

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  3 in total

1.  Mass spectrometric separation and quantitation of overlapping isotopologues. H2O/HOD/D2O and H2Se/HDSe/D2Se mixtures.

Authors:  Juris Meija; Zoltan Mester; Alessandro D'Ulivo
Journal:  J Am Soc Mass Spectrom       Date:  2006-05-19       Impact factor: 3.109

2.  Weighted two-band target entropy minimization for the reconstruction of pure component mass spectra: simulation studies and the application to real systems.

Authors:  Huajun Zhang; Marc Garland; Yingzhi Zeng; Ping Wu
Journal:  J Am Soc Mass Spectrom       Date:  2003-11       Impact factor: 3.109

3.  Weakened N3 Hydrogen Bonding by 5-Formylcytosine and 5-Carboxylcytosine Reduces Their Base-Pairing Stability.

Authors:  Qing Dai; Paul J Sanstead; Chunte Sam Peng; Dali Han; Chuan He; Andrei Tokmakoff
Journal:  ACS Chem Biol       Date:  2015-12-17       Impact factor: 5.100

  3 in total

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