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Literature DB >> 11976315

The secE gene of Helicobacter pylori.

Claudine Médigue¹, Benjamin Chun-Yu Wong, Marie Chia-Mi Lin, Stéphanie Bocs, Antoine Danchin.

Abstract

Despite extensive annotation by two independent teams, the Helicobacter pylori genome appeared to lack a complete secretion machinery. The use of clinical isolates to substantiate in silico annotation is used here to identify the missing secE component of the major secretion machinery of Helicobacter pylori.

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Year: 2002 PMID： 11976315 PMCID： PMC135042 DOI： 10.1128/JB.184.10.2837-2840.2002

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

11 in total

1. Imagene: an integrated computer environment for sequence annotation and analysis.

Authors: C Médigue; F Rechenmann; A Danchin; A Viari
Journal: Bioinformatics Date: 1999-01 Impact factor: 6.937

2. Mapping the sites of interaction between SecY and SecE by cysteine scanning mutagenesis.

Authors: A K Veenendaal; C van der Does; A J Driessen
Journal: J Biol Chem Date: 2001-07-09 Impact factor: 5.157

Review 3. The structural basis of protein targeting and translocation in bacteria.

Authors: A J Driessen; E H Manting; C van der Does
Journal: Nat Struct Biol Date: 2001-06

4. Recombination and clonal groupings within Helicobacter pylori from different geographical regions.

Authors: M Achtman; T Azuma; D E Berg; Y Ito; G Morelli; Z J Pan; S Suerbaum; S A Thompson; A van der Ende; L J van Doorn
Journal: Mol Microbiol Date: 1999-05 Impact factor: 3.501

5. Long non-stop reading frames on the antisense strand of heat shock protein 70 genes and prion protein (PrP) genes are conserved between species.

Authors: K I Rother; O K Clay; J P Bourquin; J Silke; W Schaffner
Journal: Biol Chem Date: 1997-12 Impact factor: 3.915

Review 6. Protein translocation in the three domains of life: variations on a theme.

Authors: M Pohlschröder; W A Prinz; E Hartmann; J Beckwith
Journal: Cell Date: 1997-11-28 Impact factor: 41.582

7. Applications of GeneMark in multispecies environments.

Authors: J D McIninch; W S Hayes; M Borodovsky
Journal: Proc Int Conf Intell Syst Mol Biol Date: 1996

8. Microbial gene identification using interpolated Markov models.

Authors: S L Salzberg; A L Delcher; S Kasif; O White
Journal: Nucleic Acids Res Date: 1998-01-15 Impact factor: 16.971

9. Residues essential for the function of SecE, a membrane component of the Escherichia coli secretion apparatus, are located in a conserved cytoplasmic region.

Authors: C K Murphy; J Beckwith
Journal: Proc Natl Acad Sci U S A Date: 1994-03-29 Impact factor: 11.205

Review 5. Structural analysis of hypothetical proteins from Helicobacter pylori: an approach to estimate functions of unknown or hypothetical proteins.

Authors: Sung Jean Park; Woo Sung Son; Bong-Jin Lee
Journal: Int J Mol Sci Date: 2012-06-08 Impact factor: 6.208

5 in total

The secE gene of Helicobacter pylori.

1. Imagene: an integrated computer environment for sequence annotation and analysis.

2. Mapping the sites of interaction between SecY and SecE by cysteine scanning mutagenesis.

Review 3. The structural basis of protein targeting and translocation in bacteria.

4. Recombination and clonal groupings within Helicobacter pylori from different geographical regions.

5. Long non-stop reading frames on the antisense strand of heat shock protein 70 genes and prion protein (PrP) genes are conserved between species.

Review 6. Protein translocation in the three domains of life: variations on a theme.

7. Applications of GeneMark in multispecies environments.

8. Microbial gene identification using interpolated Markov models.

9. Residues essential for the function of SecE, a membrane component of the Escherichia coli secretion apparatus, are located in a conserved cytoplasmic region.

10. Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes.

1. AMIGene: Annotation of MIcrobial Genes.

2. A revised annotation and comparative analysis of Helicobacter pylori genomes.

3. Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes.

Review 4. Comparative genomics of Helicobacter pylori.

Review 5. Structural analysis of hypothetical proteins from Helicobacter pylori: an approach to estimate functions of unknown or hypothetical proteins.