Literature DB >> 11964237

An innovative procedure using a sublimable solid to align lipid bilayers for solid-state NMR studies.

Kevin J Hallock1, Katherine Henzler Wildman, Dong-Kuk Lee, Ayyalusamy Ramamoorthy.   

Abstract

Uniaxially aligned phospholipid bilayers are often used as model membranes to obtain structural details of membrane-associated molecules, such as peptides, proteins, drugs, and cholesterol. Well-aligned bilayer samples can be difficult to prepare and no universal procedure has been reported that orients all combinations of membrane-embedded components. In this study, a new method for producing mechanically aligned phospholipid bilayer samples using naphthalene, a sublimable solid, was developed. Using (31)P-NMR spectroscopy, comparison of a conventional method of preparing mechanically aligned samples with the new naphthalene procedure found that the use of naphthalene significantly enhanced the alignment of 3:1 1-palmitoyl-2-oleoyl-phosphatidylethanolamine to 1-palmitoyl-2-oleoyl-phosphatidylglycerol. The utility of the naphthalene procedure is also demonstrated on bilayers of many different compositions, including bilayers containing peptides such as pardaxin and gramicidin. These results show that the naphthalene procedure is a generally applicable method for producing mechanically aligned samples for use in NMR spectroscopy. The increase in bilayer alignment implies that this procedure will improve the sensitivity of solid-state NMR experiments, in particular those techniques that detect low-sensitivity nuclei, such as 15N and 13C.

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Year:  2002        PMID: 11964237      PMCID: PMC1302039          DOI: 10.1016/S0006-3495(02)75592-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

1.  The effect of peptide/lipid hydrophobic mismatch on the phase behavior of model membranes mimicking the lipid composition in Escherichia coli membranes.

Authors:  S Morein; R E Koeppe II; G Lindblom; B de Kruijff; J A Killian
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

2.  Solid-state nuclear magnetic resonance evidence for an extended beta strand conformation of the membrane-bound HIV-1 fusion peptide.

Authors:  J Yang; C M Gabrys; D P Weliky
Journal:  Biochemistry       Date:  2001-07-10       Impact factor: 3.162

3.  Studies of phospholipid hydration by high-resolution magic-angle spinning nuclear magnetic resonance.

Authors:  Z Zhou; B G Sayer; D W Hughes; R E Stark; R M Epand
Journal:  Biophys J       Date:  1999-01       Impact factor: 4.033

4.  Helix tilt of the M2 transmembrane peptide from influenza A virus: an intrinsic property.

Authors:  F A Kovacs; J K Denny; Z Song; J R Quine; T A Cross
Journal:  J Mol Biol       Date:  2000-01-07       Impact factor: 5.469

5.  Solid-state 15N NMR of oriented lipid bilayer bound gramicidin A'.

Authors:  L K Nicholson; F Moll; T E Mixon; P V LoGrasso; J C Lay; T A Cross
Journal:  Biochemistry       Date:  1987-10-20       Impact factor: 3.162

6.  Solid-state NMR and hydrogen-deuterium exchange in a bilayer-solubilized peptide: structural and mechanistic implications.

Authors:  M Cotten; R Fu; T A Cross
Journal:  Biophys J       Date:  1999-03       Impact factor: 4.033

7.  Site-directed solid-state NMR measurement of a ligand-induced conformational change in the serine bacterial chemoreceptor.

Authors:  O J Murphy ; F A Kovacs; E L Sicard; L K Thompson
Journal:  Biochemistry       Date:  2001-02-06       Impact factor: 3.162

8.  A differential scanning calorimetric and 31P NMR spectroscopic study of the effect of transmembrane alpha-helical peptides on the lamellar-reversed hexagonal phase transition of phosphatidylethanolamine model membranes.

Authors:  F Liu; R N Lewis; R S Hodges; R N McElhaney
Journal:  Biochemistry       Date:  2001-01-23       Impact factor: 3.162

9.  Importance of hydration for gramicidin-induced hexagonal HII phase formation in dioleoylphosphatidylcholine model membranes.

Authors:  J A Killian; B de Kruijff
Journal:  Biochemistry       Date:  1985-12-31       Impact factor: 3.162

10.  Influence of cholesterol on gramicidin-induced HII phase formation in phosphatidylcholine model membranes.

Authors:  M Gasset; J A Killian; H Tournois; B de Kruijff
Journal:  Biochim Biophys Acta       Date:  1988-03-22
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  39 in total

1.  Orientation, dynamics, and lipid interaction of an antimicrobial arylamide investigated by 19F and 31P solid-state NMR spectroscopy.

Authors:  Yongchao Su; William F DeGrado; Mei Hong
Journal:  J Am Chem Soc       Date:  2010-07-07       Impact factor: 15.419

Review 2.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

3.  Antimicrobial and membrane disrupting activities of a peptide derived from the human cathelicidin antimicrobial peptide LL37.

Authors:  Sathiah Thennarasu; Anmin Tan; Rajesh Penumatchu; Charles E Shelburne; Deborah L Heyl; Ayyalusamy Ramamoorthy
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

4.  Role of cationic group structure in membrane binding and disruption by amphiphilic copolymers.

Authors:  Edmund F Palermo; Dong-Kuk Lee; Ayyalusamy Ramamoorthy; Kenichi Kuroda
Journal:  J Phys Chem B       Date:  2010-12-21       Impact factor: 2.991

5.  Optimizing oriented planar-supported lipid samples for solid-state protein NMR.

Authors:  Jan K Rainey; Brian D Sykes
Journal:  Biophys J       Date:  2005-08-05       Impact factor: 4.033

6.  Flow-through lipid nanotube arrays for structure-function studies of membrane proteins by solid-state NMR spectroscopy.

Authors:  Eduard Y Chekmenev; Peter L Gor'kov; Timothy A Cross; Ali M Alaouie; Alex I Smirnov
Journal:  Biophys J       Date:  2006-07-21       Impact factor: 4.033

7.  Structure, topology, and tilt of cell-signaling peptides containing nuclear localization sequences in membrane bilayers determined by solid-state NMR and molecular dynamics simulation studies.

Authors:  Ayyalusamy Ramamoorthy; Senthil K Kandasamy; Dong-Kuk Lee; Srikanth Kidambi; Ronald G Larson
Journal:  Biochemistry       Date:  2007-01-30       Impact factor: 3.162

8.  Membrane composition determines pardaxin's mechanism of lipid bilayer disruption.

Authors:  Kevin J Hallock; Dong-Kuk Lee; John Omnaas; Henry I Mosberg; A Ramamoorthy
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

9.  Freezing point depression of water in phospholipid membranes: a solid-state NMR study.

Authors:  Dong-Kuk Lee; Byung Soo Kwon; Ayyalusamy Ramamoorthy
Journal:  Langmuir       Date:  2008-12-02       Impact factor: 3.882

10.  NMR structure of pardaxin, a pore-forming antimicrobial peptide, in lipopolysaccharide micelles: mechanism of outer membrane permeabilization.

Authors:  Anirban Bhunia; Prerna N Domadia; Jaume Torres; Kevin J Hallock; Ayyalusamy Ramamoorthy; Surajit Bhattacharjya
Journal:  J Biol Chem       Date:  2009-12-03       Impact factor: 5.157

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