Literature DB >> 11962608

Novel sulfoxides facilitate GC-rich template amplification.

Raj Chakrabarti1, Clarence E Schutt.   

Abstract

Certain organic solvents, such as DMSO and betaine, have been reported to enhance PCR amplification, particularly for hard-to-amplify high-GC templates. As a result of extensive structure-activity studies between two groups of compounds--amides and sulfones--we have recently discovered several other potent PCR enhancers. Here we describe the effects of a series of different sulfoxides on GC-rich template amplification and report several of these to be exceptionally effective, often outperforming DMSO. We introduce them as novel PCR enhancers. We identify tetramethylene sulfoxide as the most potent sulfur-oxygen compound in the enhancement of PCR amplification and as one of the most potent PCR enhancers currently known.

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Year:  2002        PMID: 11962608     DOI: 10.2144/02324rr04

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  11 in total

1.  Mismatch cleavage by single-strand specific nucleases.

Authors:  Bradley J Till; Chris Burtner; Luca Comai; Steven Henikoff
Journal:  Nucleic Acids Res       Date:  2004-05-11       Impact factor: 16.971

2.  Unlocking hidden genomic sequence.

Authors:  Jonathan M Keith; Duncan A E Cochran; Gita H Lala; Peter Adams; Darryn Bryant; Keith R Mitchelson
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

3.  Utility of amplification enhancers in low copy number DNA analysis.

Authors:  Pamela L Marshall; Jonathan L King; Bruce Budowle
Journal:  Int J Legal Med       Date:  2014-05-22       Impact factor: 2.686

4.  A modified MS-PCR approach to diagnose patients with Prader-Willi and Angelman syndrome.

Authors:  Jéssica Fernandes Dos Santos; Laís R Mota; Pedro Henrique Silva Andrade Rocha; Renata Lúcia L Ferreira de Lima
Journal:  Mol Biol Rep       Date:  2016-08-17       Impact factor: 2.316

5.  Direct DNA amplification from crude clinical samples using a PCR enhancer cocktail and novel mutants of Taq.

Authors:  Zhian Zhang; Milko B Kermekchiev; Wayne M Barnes
Journal:  J Mol Diagn       Date:  2010-01-14       Impact factor: 5.568

6.  Highly thermostable RadA protein from the archaeon Pyrococcus woesei enhances specificity of simplex and multiplex PCR assays.

Authors:  Aleksandra Stefanska; Lidia Gaffke; Anna-Karina Kaczorowska; Magdalena Plotka; Slawomir Dabrowski; Tadeusz Kaczorowski
Journal:  J Appl Genet       Date:  2015-09-04       Impact factor: 3.240

7.  Bovine serum albumin further enhances the effects of organic solvents on increased yield of polymerase chain reaction of GC-rich templates.

Authors:  Eric M Farell; Gladys Alexandre
Journal:  BMC Res Notes       Date:  2012-05-24

8.  Compatible solute influence on nucleic acids: many questions but few answers.

Authors:  Matthias Kurz
Journal:  Saline Syst       Date:  2008-06-03

9.  Tetraalkylammonium derivatives as real-time PCR enhancers and stabilizers of the qPCR mixtures containing SYBR Green I.

Authors:  Gouse M Shaik; Lubica Dráberová; Peter Dráber; Michael Boubelík; Petr Dráber
Journal:  Nucleic Acids Res       Date:  2008-07-07       Impact factor: 16.971

10.  Production of in vitro amplified DNA pseudolibraries and high-throughput cDNA target amplification.

Authors:  Daniel Frey; Christian Kambach; Michel O Steinmetz; Rolf Jaussi
Journal:  BMC Biotechnol       Date:  2007-06-12       Impact factor: 2.563

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