Literature DB >> 11959506

Deriving folds of macromolecular complexes through electron cryomicroscopy and bioinformatics approaches.

Wah Chiu1, Matthew L Baker, Wen Jiang, Z Hong Zhou.   

Abstract

Intermediate-resolution (7-9A) structures of large macromolecular complexes can be obtained by electron cryomicroscopy. This structural information, combined with bioinformatics data for the individual protein components or domains, can lead to a fold model for the entire complex. Such approaches have been demonstrated with the 6.8 A structure of the rice dwarf virus to derive models for the major capsid shell proteins.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 11959506     DOI: 10.1016/s0959-440x(02)00319-6

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  11 in total

1.  Using surface envelopes for discrimination of molecular models.

Authors:  Jonathan M Dugan; Russ B Altman
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

2.  Multiple structural alignment by secondary structures: algorithm and applications.

Authors:  Oranit Dror; Hadar Benyamini; Ruth Nussinov; Haim J Wolfson
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

Review 3.  The neuronal porosome complex in health and disease.

Authors:  Akshata R Naik; Kenneth T Lewis; Bhanu P Jena
Journal:  Exp Biol Med (Maywood)       Date:  2015-08-11

4.  Fingerprint-based structure retrieval using electron density.

Authors:  Shuangye Yin; Nikolay V Dokholyan
Journal:  Proteins       Date:  2011-01-03

5.  Computing a family of skeletons of volumetric models for shape description.

Authors:  Tao Ju; Matthew L Baker; Wah Chiu
Journal:  Comput Aided Des       Date:  2007-05       Impact factor: 3.027

6.  Intensity-based skeletonization of CryoEM gray-scale images using a true segmentation-free algorithm.

Authors:  Kamal Al Nasr; Chunmei Liu; Mugizi Rwebangira; Legand Burge; Jing He
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2013 Sep-Oct       Impact factor: 3.710

7.  Computational methods for constructing protein structure models from 3D electron microscopy maps.

Authors:  Juan Esquivel-Rodríguez; Daisuke Kihara
Journal:  J Struct Biol       Date:  2013-06-21       Impact factor: 2.867

8.  Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures.

Authors:  Weitao Sun; Jing He
Journal:  BMC Bioinformatics       Date:  2009-01-30       Impact factor: 3.169

9.  Neuronal Porosome-The Secretory Portal at the Nerve Terminal: It's Structure-Function, Composition, and Reconstitution.

Authors:  Bhanu P Jena
Journal:  J Mol Struct       Date:  2014-09-05       Impact factor: 3.196

10.  Model-building strategies for low-resolution X-ray crystallographic data.

Authors:  Anjum M Karmali; Tom L Blundell; Nicholas Furnham
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.