Literature DB >> 11959492

Protein folding: the free energy surface.

Martin Gruebele1.   

Abstract

Quantitative models and experiments are revealing how the folding free energy surface of a protein is sculpted by sequence and environment. The sometimes conflicting demands of folding, structure and function determine which folding pathways, if any, dominate. Recent advances include experimental estimates of diffusive barrier-crossing times, the observation of ultrafast folders amenable to full-atom simulation, the use of thermodynamic tuning and nonconservative mutations to probe 'hidden' parts of the free energy surface, and a complete microscopic theory of folding.

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Year:  2002        PMID: 11959492     DOI: 10.1016/s0959-440x(02)00304-4

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  32 in total

1.  What causes hyperfluorescence: folding intermediates or conformationally flexible native states?

Authors:  John Ervin; Edgar Larios; Szabolcs Osváth; Klaus Schulten; Martin Gruebele
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

2.  Posttransition state desolvation of the hydrophobic core of the src-SH3 protein domain.

Authors:  Weihua Guo; Sotiria Lampoudi; Joan-Emma Shea
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

3.  Single-molecule transition-state analysis of RNA folding.

Authors:  Gregory Bokinsky; David Rueda; Vinod K Misra; Maria M Rhodes; Andrew Gordus; Hazen P Babcock; Nils G Walter; Xiaowei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-17       Impact factor: 11.205

4.  Variations in the fast folding rates of the lambda-repressor: a hybrid molecular dynamics study.

Authors:  Taras V Pogorelov; Zaida Luthey-Schulten
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

5.  Folding lambda-repressor at its speed limit.

Authors:  Wei Yuan Yang; Martin Gruebele
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

6.  Intermediates and the folding of proteins L and G.

Authors:  Scott Brown; Teresa Head-Gordon
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

7.  Alpha-helix formation in a photoswitchable peptide tracked from picoseconds to microseconds by time-resolved IR spectroscopy.

Authors:  Jens Bredenbeck; Jan Helbing; Janet R Kumita; G Andrew Woolley; Peter Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-07       Impact factor: 11.205

8.  Role of unfolded state heterogeneity and en-route ruggedness in protein folding kinetics.

Authors:  Paul A Ellison; Silvia Cavagnero
Journal:  Protein Sci       Date:  2006-03       Impact factor: 6.725

9.  Multiple routes lead to the native state in the energy landscape of the beta-trefoil family.

Authors:  Leslie L Chavez; Shachi Gosavi; Patricia A Jennings; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-26       Impact factor: 11.205

Review 10.  Single-molecule fluorescence studies of protein folding and conformational dynamics.

Authors:  Xavier Michalet; Shimon Weiss; Marcus Jäger
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

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