Literature DB >> 11955021

Temperature-dependence of protein hydrogen bond properties as studied by high-resolution NMR.

Florence Cordier1, Stephan Grzesiek.   

Abstract

The temperature-dependence of a large number of NMR parameters describing hydrogen bond properties in the protein ubiquitin was followed over a range from 5 to 65 degrees C. The parameters comprise hydrogen bond (H-bond) scalar couplings, h3JNC', chemical shifts, amide proton exchange rates, 15N relaxation parameters as well as covalent 1JNC' and 1JNH couplings. A global weakening of the h3JNC' coupling with increasing temperature is accompanied by a global upfield shift of the amide protons and a decrease of the sequential 1JNC' couplings. If interpreted as a linear increase of the N...O distance, the change in h3JNC' corresponds to an average linear thermal expansion coefficient for the NH-->O hydrogen bonds of 1.7 x 10(-4)/K, which is in good agreement with overall volume expansion coefficients observed for proteins. A residue-specific analysis reveals that not all hydrogen bonds are affected to the same extent by the thermal expansion. The end of beta-sheet beta1/beta5 at hydrogen bond E64-->Q2 appears as the most thermolabile, whereas the adjacent hydrogen bond I3-->L15 connecting beta-strands beta1 and beta2 is even stabilized slightly at higher temperatures. Additional evidence for the stabilization of the beta1/beta2 beta-hairpin at higher temperatures is found in reduced hydrogen exchange rates for strand end residue V17. This reduction corresponds to a stabilizing change in free energy of 9.7 kJ/mol for the beta1/beta2 hairpin. The result can be linked to the finding that the beta1/beta2 hairpin behaves as an autonomously folding unit in the A-state of ubiquitin under changed solvent conditions. For several amide groups the temperature-dependencies of the amide exchange rates and H-bond scalar couplings are uncorrelated. Therefore, amide exchange rates are not a sole function of the hydrogen bond "strength" as given by the electronic overlap of donors and acceptors, but are clearly dependent on other blocking mechanisms. Copyright 2002 Elsevier Science Ltd.

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Year:  2002        PMID: 11955021     DOI: 10.1006/jmbi.2002.5446

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  35 in total

1.  Amide temperature coefficients in the protein G B1 domain.

Authors:  Jennifer H Tomlinson; Mike P Williamson
Journal:  J Biomol NMR       Date:  2011-11-11       Impact factor: 2.835

2.  Reversible mechanical unfolding of single ubiquitin molecules.

Authors:  Chia-Lin Chyan; Fan-Chi Lin; Haibo Peng; Jian-Min Yuan; Chung-Hung Chang; Sheng-Hsien Lin; Guoliang Yang
Journal:  Biophys J       Date:  2004-09-10       Impact factor: 4.033

3.  Thermal coefficients of the methyl groups within ubiquitin.

Authors:  T Michael Sabo; Davood Bakhtiari; Korvin F A Walter; Robert L McFeeters; Karin Giller; Stefan Becker; Christian Griesinger; Donghan Lee
Journal:  Protein Sci       Date:  2012-03-02       Impact factor: 6.725

4.  Refolding upon force quench and pathways of mechanical and thermal unfolding of ubiquitin.

Authors:  Mai Suan Li; Maksim Kouza; Chin-Kun Hu
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

5.  Molecular dynamics simulations of the native and partially folded states of ubiquitin: influence of methanol cosolvent, pH, and temperature on the protein structure and dynamics.

Authors:  David B Kony; Philippe H Hünenberger; Wilfred F van Gunsteren
Journal:  Protein Sci       Date:  2007-06       Impact factor: 6.725

6.  Dynamic motions of free and bound O29 scaffolding protein identified by hydrogen deuterium exchange mass spectrometry.

Authors:  Chi-Yu Fu; Peter E Prevelige
Journal:  Protein Sci       Date:  2006-03-07       Impact factor: 6.725

7.  Protein folding and unfolding studied at atomic resolution by fast two-dimensional NMR spectroscopy.

Authors:  Paul Schanda; Vincent Forge; Bernhard Brutscher
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-25       Impact factor: 11.205

8.  Structural dependencies of protein backbone 2JNC' couplings.

Authors:  Nenad Juranić; J J Dannenberg; Gabriel Cornilescu; Pedro Salvador; Elena Atanasova; Hee-Chul Ahn; Slobodan Macura; John L Markley; Franklyn G Prendergast
Journal:  Protein Sci       Date:  2008-02-27       Impact factor: 6.725

9.  Effect of micelle interface on the binding of anticoccidial PW2 peptide.

Authors:  Luzineide W Tinoco; Francisco Gomes-Neto; Ana Paula Valente; Fabio C L Almeida
Journal:  J Biomol NMR       Date:  2007-10-10       Impact factor: 2.835

10.  Conformational plasticity surrounding the active site of NADH oxidase from Thermus thermophilus.

Authors:  Teresa Miletti; Justin Di Trani; Louis-Charles Levros; Anthony Mittermaier
Journal:  Protein Sci       Date:  2015-05-29       Impact factor: 6.725

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