Literature DB >> 11948620

Braking the silence: how heterochromatic gene repression is stopped in its tracks.

David Donze1, Rohinton T Kamakaka.   

Abstract

Eukaryotic DNA is assembled into nucleosomes, which are further packaged into higher order chromatin structures containing many non-histone chromosomal proteins. The details of this packaging have profound effects on gene expression and other cellular processes involving the genetic material. Heterochromatic domains of the genome are usually transcriptionally repressed, while euchromatic regions are transcriptionally competent. Current models of gene activation postulate the existence of boundary elements that either prevent inappropriate activation of genes by distal enhancers (enhancer blockers), or sequences that block the propagation of heterochromatin into euchromatic regions (barriers). While numerous boundary sequences have been identified, little is known with regard to the molecular mechanisms used to punctuate the genome. This review will focus on recent data that provide insight into the mode of action of barrier elements. Copyright 2002 Wiley Periodicals, Inc.

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Year:  2002        PMID: 11948620     DOI: 10.1002/bies.10072

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  28 in total

1.  Rap1p and other transcriptional regulators can function in defining distinct domains of gene expression.

Authors:  Qun Yu; Runxiang Qiu; Travis B Foland; Dan Griesen; Carl S Galloway; Ya-Hui Chiu; Joseph Sandmeier; James R Broach; Xin Bi
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

2.  The vertebrate protein CTCF functions as an insulator in Saccharomyces cerevisiae.

Authors:  Pierre-Antoine Defossez; Eric Gilson
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

3.  The c-myc insulator element and matrix attachment regions define the c-myc chromosomal domain.

Authors:  Wendy M Gombert; Stephen D Farris; Eric D Rubio; Kristin M Morey-Rosler; William H Schubach; Anton Krumm
Journal:  Mol Cell Biol       Date:  2003-12       Impact factor: 4.272

4.  Molecular requirements for gene expression mediated by targeted histone acetyltransferases.

Authors:  Sandra Jacobson; Lorraine Pillus
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

5.  Barrier proteins remodel and modify chromatin to restrict silenced domains.

Authors:  Masaya Oki; Lourdes Valenzuela; Tomoko Chiba; Takashi Ito; Rohinton T Kamakaka
Journal:  Mol Cell Biol       Date:  2004-03       Impact factor: 4.272

6.  Formation of boundaries of transcriptionally silent chromatin by nucleosome-excluding structures.

Authors:  Xin Bi; Qun Yu; Joseph J Sandmeier; Yanfei Zou
Journal:  Mol Cell Biol       Date:  2004-03       Impact factor: 4.272

7.  The Saccharomyces cerevisiae TRT2 tRNAThr gene upstream of STE6 is a barrier to repression in MATalpha cells and exerts a potential tRNA position effect in MATa cells.

Authors:  Tiffany A Simms; Elsy C Miller; Nicolas P Buisson; Nithya Jambunathan; David Donze
Journal:  Nucleic Acids Res       Date:  2004-09-30       Impact factor: 16.971

Review 8.  The nuclear pore complex: bridging nuclear transport and gene regulation.

Authors:  Caterina Strambio-De-Castillia; Mario Niepel; Michael P Rout
Journal:  Nat Rev Mol Cell Biol       Date:  2010-07       Impact factor: 94.444

9.  Histone H1 of Saccharomyces cerevisiae inhibits transcriptional silencing.

Authors:  Marie Veron; Yanfei Zou; Qun Yu; Xin Bi; Abdelkader Selmi; Eric Gilson; Pierre-Antoine Defossez
Journal:  Genetics       Date:  2006-04-02       Impact factor: 4.562

10.  Multiple bromodomain genes are involved in restricting the spread of heterochromatic silencing at the Saccharomyces cerevisiae HMR-tRNA boundary.

Authors:  Nithya Jambunathan; Adam W Martinez; Elizabeth C Robert; Nneamaka B Agochukwu; Megan E Ibos; Sandra L Dugas; David Donze
Journal:  Genetics       Date:  2005-08-03       Impact factor: 4.562

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