Literature DB >> 11948615

DNA replication joins the revolution: whole-genome views of DNA replication in budding yeast.

Carol S Newlon1, James F Theis.   

Abstract

Replication origins, which are responsible for initiating the replication of eukaryotic chromosomal DNAs, are spaced at intervals of 40 to 200 kb. Although the sets of proteins that assemble at replication origins during G(1) to form pre-replicative complexes are highly conserved, the structures of replication origins varies from organism to organism. The identification of replication origins has been a labor-intensive task, requiring the analysis of chromosomal DNA replication intermediates. As a result, only a few replication origins have been identified and studied. In a pair of recently published papers, Raghuraman and colleagues and Wyrick, Aparicio and colleagues provide complementary microarray-based approaches to the identification of replication origins. These genome-wide views of DNA replication in Saccharomyces cerevisiae provide new insights into the way that the genome is duplicated and hold promise for the analysis of other genomes. Copyright 2002 Wiley Periodicals, Inc.

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Year:  2002        PMID: 11948615     DOI: 10.1002/bies.10075

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  12 in total

1.  Least-Squares Support Vector Machine Approach to Viral Replication Origin Prediction.

Authors:  Raul Cruz-Cano; David S H Chew; Choi Kwok-Pui; Leung Ming-Ying
Journal:  INFORMS J Comput       Date:  2010-06-01       Impact factor: 2.276

Review 2.  Nonrandom clusters of palindromes in herpesvirus genomes.

Authors:  Ming-Ying Leung; Kwok Pui Choi; Aihua Xia; Louis H Y Chen
Journal:  J Comput Biol       Date:  2005-04       Impact factor: 1.479

3.  Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches.

Authors:  Aloys Schepers; Peer Papior
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

4.  Defining components of the chromosomal origin of replication of the hyperthermophilic archaeon Pyrococcus furiosus needed for construction of a stable replicating shuttle vector.

Authors:  Joel Farkas; Daehwan Chung; Megan DeBarry; Michael W W Adams; Janet Westpheling
Journal:  Appl Environ Microbiol       Date:  2011-07-22       Impact factor: 4.792

5.  Defined sequence modules and an architectural element cooperate to promote initiation at an ectopic mammalian chromosomal replication origin.

Authors:  Amy L Altman; Ellen Fanning
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

6.  Tolerance of Sir1p/origin recognition complex-dependent silencing for enhanced origin firing at HMRa.

Authors:  Kristopher H McConnell; Philipp Müller; Catherine A Fox
Journal:  Mol Cell Biol       Date:  2006-03       Impact factor: 4.272

7.  H2A.Z demarcates intergenic regions of the plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3.

Authors:  Richárd Bártfai; Wieteke A M Hoeijmakers; Adriana M Salcedo-Amaya; Arne H Smits; Eva Janssen-Megens; Anita Kaan; Moritz Treeck; Tim-Wolf Gilberger; Kees-Jan Françoijs; Hendrik G Stunnenberg
Journal:  PLoS Pathog       Date:  2010-12-16       Impact factor: 6.823

8.  Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae.

Authors:  Birgitte Regenberg; Thomas Grotkjaer; Ole Winther; Anders Fausbøll; Mats Akesson; Christoffer Bro; Lars Kai Hansen; Søren Brunak; Jens Nielsen
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

9.  The structure of ORC-Cdc6 on an origin DNA reveals the mechanism of ORC activation by the replication initiator Cdc6.

Authors:  Xiang Feng; Yasunori Noguchi; Marta Barbon; Bruce Stillman; Christian Speck; Huilin Li
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 17.694

10.  Susceptibility to superhelically driven DNA duplex destabilization: a highly conserved property of yeast replication origins.

Authors:  Prashanth Ak; Craig J Benham
Journal:  PLoS Comput Biol       Date:  2005-06-24       Impact factor: 4.475

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