Literature DB >> 11948222

A radiation hybrid mapping panel for the rhesus macaque.

W J Murphy1, J E Page, C Smith, R C Desrosiers, S J O'Brien.   

Abstract

The genomes of nonhuman primates have recently become highly visible candidates for full genome analysis, as they provide powerful models of human disease and a better understanding of the evolution of the human genome. We describe the creation of a 5000 rad radiation hybrid (RH) mapping panel for the rhesus macaque. Duplicate genotypes of 84 microsatellite and coding gene sequence tagged sites from six macaque chromosomes produced an estimated whole genome retention frequency of 0.33. To test the mapping ability of the panel, we constructed RH maps for macaque chromosomes 7 and 9 and compared them to orthologous locus orders in existing human and baboon maps derived from different methodologies. Concordant marker order between all three species maps suggests that the current panel represents a powerful mapping resource for generating high-density comparative maps of the rhesus macaque and other species genomes.

Entities:  

Mesh:

Year:  2001        PMID: 11948222     DOI: 10.1093/jhered/92.6.516

Source DB:  PubMed          Journal:  J Hered        ISSN: 0022-1503            Impact factor:   2.645


  8 in total

1.  A high-resolution 15,000(Rad) radiation hybrid panel for the domestic cat.

Authors:  L H Bach; B Gandolfi; J C Grahn; L V Millon; M S Kent; K Narfstrom; S A Cole; J C Mullikin; R A Grahn; L A Lyons
Journal:  Cytogenet Genome Res       Date:  2012-07-06       Impact factor: 1.636

2.  A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes.

Authors:  Andy Lin; Richard T Wang; Sangtae Ahn; Christopher C Park; Desmond J Smith
Journal:  Genome Res       Date:  2010-05-27       Impact factor: 9.043

3.  Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event.

Authors:  M Katharine Rudd; Raelynn M Endicott; Cynthia Friedman; Megan Walker; Janet M Young; Kazutoyo Osoegawa; Pieter J de Jong; Eric D Green; Barbara J Trask
Journal:  Genome Res       Date:  2008-10-24       Impact factor: 9.043

4.  Pooled genomic indexing of rhesus macaque.

Authors:  Aleksandar Milosavljevic; Ronald A Harris; Erica J Sodergren; Andrew R Jackson; Ken J Kalafus; Anne Hodgson; Andrew Cree; Weilie Dai; Miklos Csuros; Baoli Zhu; Pieter J de Jong; George M Weinstock; Richard A Gibbs
Journal:  Genome Res       Date:  2005-02       Impact factor: 9.043

5.  Identifying human-rhesus macaque gene orthologs using heterospecific SNP probes.

Authors:  Sree Kanthaswamy; Jillian Ng; Cody T Ross; Jessica Satkoski Trask; David Glenn Smith; Vince S Buffalo; Joseph N Fass; Dawei Lin
Journal:  Genomics       Date:  2012-09-12       Impact factor: 5.736

6.  A high-resolution radiation hybrid map of rhesus macaque chromosome 5 identifies rearrangements in the genome assembly.

Authors:  Genesio M Karere; Lutz Froenicke; Lee Millon; James E Womack; Leslie A Lyons
Journal:  Genomics       Date:  2008-07-31       Impact factor: 5.736

7.  Development of a deer mouse whole-genome radiation hybrid panel and comparative mapping of Mus chromosome 11 loci.

Authors:  Clifton M Ramsdell; Elizabeth L Thames; Julie L Weston; Michael J Dewey
Journal:  Mamm Genome       Date:  2006-01-13       Impact factor: 3.224

8.  Neocentromeres in 15q24-26 map to duplicons which flanked an ancestral centromere in 15q25.

Authors:  Mario Ventura; Jonathan M Mudge; Valeria Palumbo; Sally Burn; Elisabeth Blennow; Mauro Pierluigi; Roberto Giorda; Orsetta Zuffardi; Nicoletta Archidiacono; Michael S Jackson; Mariano Rocchi
Journal:  Genome Res       Date:  2003-08-12       Impact factor: 9.043

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.