Literature DB >> 11948171

Analysis of the heat shock response of Neisseria meningitidis with cDNA- and oligonucleotide-based DNA microarrays.

Matthias Guckenberger1, Sebastian Kurz, Christian Aepinus, Stephanie Theiss, Sabine Haller, Thomas Leimbach, Ursula Panzner, Jacqueline Weber, Hubert Paul, Alexandra Unkmeir, Matthias Frosch, Guido Dietrich.   

Abstract

Oligonucleotide- and cDNA-based microarrays comprising a subset of Neisseria meningitidis genes were assessed for study of the meningococcal heat shock response and found to be highly suitable for transcriptional profiling of N. meningitidis. Employing oligonucleotide arrays encompassing the entire genome of N. meningitidis, we analyzed the meningococcal heat shock response on a global scale and identified 55 heat shock-deregulated open reading frames (34 induced and 21 repressed).

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Year:  2002        PMID： 11948171      PMCID： PMC134990          DOI： 10.1128/JB.184.9.2546-2551.2002

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  26 in total

1.  Isolation of RNA from mycobacteria grown under in vitro and in vivo conditions.

Authors:  G Dietrich; U E Schaible; K D Diehl; H Mollenkopf; S Wiek; J Hess; K Hagens; S H Kaufmann; B Knapp
Journal:  FEMS Microbiol Lett       Date:  2000-05-15       Impact factor: 2.742

2.  Pushing the limits of cellular microbiology: microarrays to study bacteria-host cell intimate contacts.

Authors:  R Rappuoli
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

3.  Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays.

Authors:  M D Kane; T A Jatkoe; C R Stumpf; J Lu; J D Thomas; S J Madore
Journal:  Nucleic Acids Res       Date:  2000-11-15       Impact factor: 16.971

4.  RNA expression analysis using a 30 base pair resolution Escherichia coli genome array.

Authors:  D W Selinger; K J Cheung; R Mei; E M Johansson; C S Richmond; F R Blattner; D J Lockhart; G M Church
Journal:  Nat Biotechnol       Date:  2000-12       Impact factor: 54.908

5.  Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations.

Authors:  M L Lee; F C Kuo; G A Whitmore; J Sklar
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

6.  DNA microarray detection of metabolic responses to protein overproduction in Escherichia coli.

Authors:  M K Oh; J C Liao
Journal:  Metab Eng       Date:  2000-07       Impact factor: 9.783

Review 7.  The heat shock response of Escherichia coli.

Authors:  F Arsène; T Tomoyasu; B Bukau
Journal:  Int J Food Microbiol       Date:  2000-04-10       Impact factor: 5.277

8.  Global differential gene expression in response to growth temperature alteration in group A Streptococcus.

Authors:  L M Smoot; J C Smoot; M R Graham; G A Somerville; D E Sturdevant; C A Migliaccio; G L Sylva; J M Musser
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

9.  Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer.

Authors:  T R Hughes; M Mao; A R Jones; J Burchard; M J Marton; K W Shannon; S M Lefkowitz; M Ziman; J M Schelter; M R Meyer; S Kobayashi; C Davis; H Dai; Y D He; S B Stephaniants; G Cavet; W L Walker; A West; E Coffey; D D Shoemaker; R Stoughton; A P Blanchard; S H Friend; P S Linsley
Journal:  Nat Biotechnol       Date:  2001-04       Impact factor: 54.908

Review 10.  Using DNA microarrays to study host-microbe interactions.

Authors:  C A Cummings; D A Relman
Journal:  Emerg Infect Dis       Date:  2000 Sep-Oct       Impact factor: 6.883
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  17 in total

1.  Validation of a novel, fully integrated and flexible microarray benchtop facility for gene expression profiling.

Authors:  Michael Baum; Simone Bielau; Nicole Rittner; Kathrin Schmid; Kathrin Eggelbusch; Michael Dahms; Andrea Schlauersbach; Harald Tahedl; Markus Beier; Ramon Güimil; Matthias Scheffler; Carsten Hermann; Jörg-Michael Funk; Anke Wixmerten; Hans Rebscher; Matthias Hönig; Claas Andreae; Daniel Büchner; Erich Moschel; Andreas Glathe; Evelyn Jäger; Marc Thom; Andreas Greil; Felix Bestvater; Frank Obermeier; Josef Burgmaier; Klaus Thome; Sigrid Weichert; Silke Hein; Tim Binnewies; Volker Foitzik; Manfred Müller; Cord Friedrich Stähler; Peer Friedrich Stähler
Journal:  Nucleic Acids Res       Date:  2003-12-01       Impact factor: 16.971

2.  Transcriptome analysis of Neisseria meningitidis during infection.

Authors:  Guido Dietrich; Sebastian Kurz; Claudia Hübner; Christian Aepinus; Stephanie Theiss; Matthias Guckenberger; Ursula Panzner; Jacqueline Weber; Matthias Frosch
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

Review 3.  Integrative biological analysis for neuropsychopharmacology.

Authors:  Mark R Emmett; Roger A Kroes; Joseph R Moskal; Charles A Conrad; Waldemar Priebe; Fernanda Laezza; Anke Meyer-Baese; Carol L Nilsson
Journal:  Neuropsychopharmacology       Date:  2013-06-26       Impact factor: 7.853

4.  Phenotypic and transcriptional characterization of the meningococcal PhoPQ system, a magnesium-sensing two-component regulatory system that controls genes involved in remodeling the meningococcal cell surface.

Authors:  J Newcombe; J C Jeynes; E Mendoza; J Hinds; G L Marsden; R A Stabler; M Marti; J J McFadden
Journal:  J Bacteriol       Date:  2005-07       Impact factor: 3.490

5.  Global expression of prophage genes in Escherichia coli O157:H7 strain EDL933 in response to norfloxacin.

Authors:  Sylvia Herold; Jutta Siebert; Andrea Huber; Herbert Schmidt
Journal:  Antimicrob Agents Chemother       Date:  2005-03       Impact factor: 5.191

6.  Global gene expression analysis of the heat shock response in the phytopathogen Xylella fastidiosa.

Authors:  Tie Koide; Ricardo Z N Vêncio; Suely L Gomes
Journal:  J Bacteriol       Date:  2006-08       Impact factor: 3.490

7.  Comparison of the RpoH-dependent regulon and general stress response in Neisseria gonorrhoeae.

Authors:  Ishara C Gunesekere; Charlene M Kahler; David R Powell; Lori A S Snyder; Nigel J Saunders; Julian I Rood; John K Davies
Journal:  J Bacteriol       Date:  2006-07       Impact factor: 3.490

8.  Comparative genome hybridization reveals substantial variation among clinical isolates of Borrelia burgdorferi sensu stricto with different pathogenic properties.

Authors:  Darya Terekhova; Radha Iyer; Gary P Wormser; Ira Schwartz
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

9.  The RpoH-mediated stress response in Neisseria gonorrhoeae is regulated at the level of activity.

Authors:  Lina Laskos; Catherine S Ryan; Janet A M Fyfe; John K Davies
Journal:  J Bacteriol       Date:  2004-12       Impact factor: 3.490

10.  Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655.

Authors:  Stephen J Brokx; Michael Ellison; Troy Locke; Drell Bottorff; Laura Frost; Joel H Weiner
Journal:  J Bacteriol       Date:  2004-05       Impact factor: 3.490
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