Literature DB >> 11939597

Conformational analysis of the tyrosine dipeptide analogue in the gas phase and in aqueous solution by a density functional/continuum solvent model.

Emma Langella1, Nadia Rega, Roberto Improta, Orlando Crescenzi, Vincenzo Barone.   

Abstract

The conformational behavior of a dipeptide analogue of tyrosine (TDA) has been investigated by density functional methods using the polarizable continuum model (PCM) for the description of solvent effects. Our study points out the interplay of backbone and side chain contributions in determining the relative stabilities of energy minima. In particular, stabilizing interactions between the NH bond and the aromatic ring have a significant effect. The topology of the potential energy surface is significantly modified in aqueous solution due to a general widening of low energy regions and to a stabilization of helical structures.

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Year:  2002        PMID: 11939597     DOI: 10.1002/jcc.10065

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  2 in total

1.  Density functional conformational study of 2-O-sulfated 3,6 anhydro-α-D-galactose and of neo-κ- and ι-carrabiose molecules in gas phase and water.

Authors:  Noreya Bestaoui-Berrekhchi-Berrahma; Philippe Derreumaux; Majda Sekkal-Rahal; Michael Springborg; Adlane Sayede; Noureddine Yousfi; Abd-Ed-Daim Kadoun
Journal:  J Mol Model       Date:  2012-10-20       Impact factor: 1.810

2.  A Not Obvious Correlation Between the Structure of Green Fluorescent Protein Chromophore Pocket and Hydrogen Bond Dynamics: A Choreography From ab initio Molecular Dynamics.

Authors:  Federico Coppola; Fulvio Perrella; Alessio Petrone; Greta Donati; Nadia Rega
Journal:  Front Mol Biosci       Date:  2020-10-27
  2 in total

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