Literature DB >> 11934754

MaxBench: evaluation of sequence and structure comparison methods.

Raphael Leplae1, Tim J P Hubbard.   

Abstract

SUMMARY: MaxBench is a web-based system available for evaluating the results of sequence and structure comparison methods, based on the SCOP protein domain classification. The system makes it easy for developers to both compare the overall performance of their methods to standard algorithms and investigate the results of individual comparisons. AVAILABILITY: http://www.sanger.ac.uk/Users/lp1/MaxBench/

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Year:  2002        PMID： 11934754     DOI： 10.1093/bioinformatics/18.3.494

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  5 in total

1.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

2.  Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.

Authors:  Rachel Kolodny; Patrice Koehl; Michael Levitt
Journal:  J Mol Biol       Date:  2005-01-16       Impact factor: 5.469

3.  ProCKSI: a decision support system for Protein (structure) Comparison, Knowledge, Similarity and Information.

Authors:  Daniel Barthel; Jonathan D Hirst; Jacek Błazewicz; Edmund K Burke; Natalio Krasnogor
Journal:  BMC Bioinformatics       Date:  2007-10-26       Impact factor: 3.169

4.  TM-align: a protein structure alignment algorithm based on the TM-score.

Authors:  Yang Zhang; Jeffrey Skolnick
Journal:  Nucleic Acids Res       Date:  2005-04-22       Impact factor: 16.971

5.  Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score.

Authors:  Shashi Bhushan Pandit; Jeffrey Skolnick
Journal:  BMC Bioinformatics       Date:  2008-12-12       Impact factor: 3.169
  5 in total

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