Literature DB >> 11934751

ProbeMatchDB--a web database for finding equivalent probes across microarray platforms and species.

Pinglang Wang1, Fei Ding, Hsienyuan Chiang, Robert C Thompson, Stanley J Watson, Fan Meng.   

Abstract

SUMMARY: ProbeMatchDB is a web-based database designed to facilitate the search of EST/cDNA sequences or STS markers that can be used to represent the same gene across different microarray platforms and species. It can be used for finding equivalent EST clones in the Research Genetics sequence verified clone set based on results from Affymetirx GeneChips. It will also help to identify probes representing orthologous genes across human, mouse and rat on different microarray platforms. AVAILABILITY: The database is accessible at http://brainarray.mhri.med.umich.edu/MARRAY/BC_ASP/brainarray.htm by clicking the 'Query ProbeMatchDB' link.

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Year:  2002        PMID： 11934751     DOI： 10.1093/bioinformatics/18.3.488

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  10 in total

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Journal:  Methods Mol Biol       Date:  2012

2.  Highly conserved transcriptional responses to mechanical ventilation of the lung.

Authors:  Kenneth S Kompass; Gaetan Deslee; Carla Moore; Donald McCurnin; Richard A Pierce
Journal:  Physiol Genomics       Date:  2010-05-11       Impact factor: 3.107

3.  Changes in eutopic endometrial gene expression during the progression of experimental endometriosis in the baboon, Papio anubis.

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Journal:  Biol Reprod       Date:  2013-02-21       Impact factor: 4.285

4.  The disruption of Celf6, a gene identified by translational profiling of serotonergic neurons, results in autism-related behaviors.

Authors:  Joseph D Dougherty; Susan E Maloney; David F Wozniak; Michael A Rieger; Lisa Sonnenblick; Giovanni Coppola; Nathaniel G Mahieu; Juliet Zhang; Jinlu Cai; Gary J Patti; Brett S Abrahams; Daniel H Geschwind; Nathaniel Heintz
Journal:  J Neurosci       Date:  2013-02-13       Impact factor: 6.167

5.  Tramtrack is genetically upstream of genes controlling tracheal tube size in Drosophila.

Authors:  Barbara Rotstein; David Molnar; Boris Adryan; Marta Llimargas
Journal:  PLoS One       Date:  2011-12-22       Impact factor: 3.240

6.  CROPPER: a metagene creator resource for cross-platform and cross-species compendium studies.

Authors:  Jussi Paananen; Markus Storvik; Garry Wong
Journal:  BMC Bioinformatics       Date:  2006-09-22       Impact factor: 3.169

7.  Storing, linking, and mining microarray databases using SRS.

Authors:  Antoine Veldhoven; Don de Lange; Marcel Smid; Victor de Jager; Jan A Kors; Guido Jenster
Journal:  BMC Bioinformatics       Date:  2005-07-27       Impact factor: 3.169

8.  Exploring the molecular pathogenesis associated with T-cell prolymphocytic leukemia based on a comprehensive bioinformatics analysis.

Authors:  Zhangzhen Shi; Jing Yu; Hui Shao; Kailiang Cheng; Jingjie Zhai; Qi Jiang; Hongjun Li
Journal:  Oncol Lett       Date:  2018-05-02       Impact factor: 2.967

9.  AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities.

Authors:  Fahim Mohammad; Robert M Flight; Benjamin J Harrison; Jeffrey C Petruska; Eric C Rouchka
Journal:  BMC Bioinformatics       Date:  2012-09-12       Impact factor: 3.169

10.  Application of a correlation correction factor in a microarray cross-platform reproducibility study.

Authors:  Kellie J Archer; Catherine I Dumur; G Scott Taylor; Michael D Chaplin; Anthony Guiseppi-Elie; Geraldine Grant; Andrea Ferreira-Gonzalez; Carleton T Garrett
Journal:  BMC Bioinformatics       Date:  2007-11-15       Impact factor: 3.169
  10 in total

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